| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,375,792 – 18,375,891 |
| Length | 99 |
| Max. P | 0.570127 |
| Location | 18,375,792 – 18,375,891 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 126 |
| Reading direction | forward |
| Mean pairwise identity | 60.68 |
| Shannon entropy | 0.65248 |
| G+C content | 0.56207 |
| Mean single sequence MFE | -38.24 |
| Consensus MFE | -15.64 |
| Energy contribution | -18.52 |
| Covariance contribution | 2.88 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.570127 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18375792 99 + 22422827 CAAUGGGUUGAGUCUUCGAAGGAGCUAUGCCCCAAGCUCCAACGCUUUGGAUGGGCAACUUCAUGGGUUCGUGUGUGGGCAACUU---CAUUGACUCGUGAG------------------------ .....(((((.((((.((..((((((........))))))..))....))))...)))))(((((((((.(((...((....)).---))).))))))))).------------------------ ( -34.90, z-score = -1.57, R) >droEre2.scaffold_4690 8693368 123 + 18748788 UUAUGGAAUGAGGCUGCGGAGGAGCUAUGCCCCAAGCUCCAACGCUCUGGAUGGGCAUCUUUAUGGGCUCGUGAGUGGGCCUAUU---CAUGGACUCGUGAGUGGGCAUCUUCAUGGACUCGUGAG .........((.((((((..((((((........))))))..))).(.....)))).)).(((((((..((((((...(((((((---((((....)))))))))))...))))))..))))))). ( -49.00, z-score = -1.82, R) >droSec1.super_8 681793 123 + 3762037 UAAUGGGAUGCGUCUUCGGAGGAGCUAUGCCCCAAGCUCCAACGCUUUGGAUAGGCAACUUCAUGGGUUCGGGUGUGGGCAACUU---CAUGGGUUCGUGUGUCGGCAACUUCAUGGACUCGUGAG .....((...(.((....)).)..)).(((((...((((.(((.(....((.((....))))..).))).))))..)))))...(---((((((((((((....(....)..))))))))))))). ( -43.80, z-score = -1.14, R) >droSim1.chrX_random 4755215 99 + 5698898 CCACGGGAUACGUCUUCGGAGGAGCUAUGCCCCAGGCUCCAACGCUUUGGAUGGGCAACUUCAUGGGUUCGUGUGUGGGCAACUU---CAUGGACUCGUGAG------------------------ ..........(((((.((..((((((........))))))..))....)))))(....).(((((((((((((...((....)).---))))))))))))).------------------------ ( -37.90, z-score = -1.52, R) >droVir3.scaffold_12726 2185594 85 + 2840439 ---------ACAUCCU----GAAACUGACCCCUGCCCUCCGGCAC----AGCGGGCCGUUGAUUGGGUUGGAAUCUUGGCUGCUCUCGCACGGCUUCAUGGG------------------------ ---------....(((----(((.(..((((.((((....))))(----((((...)))))...))))..).......((((........)))))))).)).------------------------ ( -25.60, z-score = 0.71, R) >consensus CAAUGGGAUGCGUCUUCGGAGGAGCUAUGCCCCAAGCUCCAACGCUUUGGAUGGGCAACUUCAUGGGUUCGUGUGUGGGCAACUU___CAUGGACUCGUGAG________________________ ....................((((((........))))))...((((.....))))...((((((((((((((...((....))....))))))))))))))........................ (-15.64 = -18.52 + 2.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:00 2011