Locus 15315

Sequence ID dm3.chrX
Location 18,372,776 – 18,372,869
Length 93
Max. P 0.787178
window21099 window21100

overview

Window 9

Location 18,372,776 – 18,372,869
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 78.12
Shannon entropy 0.43949
G+C content 0.51296
Mean single sequence MFE -28.62
Consensus MFE -16.04
Energy contribution -16.48
Covariance contribution 0.45
Combinations/Pair 1.19
Mean z-score -1.66
Structure conservation index 0.56
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.69
SVM RNA-class probability 0.787178
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 18372776 93 + 22422827
CCGGGAAUGCUAAAGGUAAUUCCGAAAUCCCGGCGAGAAUGCCAGGACAUGGCUCAUUUGUCAAGUUGGCUUAGCCAGACUUAGCCGAUUUGC
.(((((.(((.....))).))))).......((((((...((((.....))))...))))))(((((((((.((.....)).))))))))).. ( -30.20, z-score =  -1.63, R)
>droSim1.chrX 14164866 93 + 17042790
CCGAGAAUGCUAAAGGUAAUUCCGAAAUCCCGGCGAGAAUGCCAGGACUUGGCUCAUUUGUCAAGUUGGCUUAGCCAGACUUAGCCGAUUUGC
(((((.........((.....))....(((.(((......))).)))))))).........((((((((((.((.....)).)))))))))). ( -27.40, z-score =  -1.25, R)
>droSec1.super_8 678697 93 + 3762037
CCGAGAAUGCUAAAGGUAAUUCCGAAAUCCCGGCGAGAAUGCCAGGACUUGGCUCAUUUGUCAAGUUGGCUUAGCCAGACUUAGCCGAUUUGC
(((((.........((.....))....(((.(((......))).)))))))).........((((((((((.((.....)).)))))))))). ( -27.40, z-score =  -1.25, R)
>droYak2.chrX 17003747 81 + 21770863
------------AAGGUAAUUCCGAAAUCCCGGCCAGAAUGCCAGAACUUGGCUCAUUUGUCAAGUUGGCUUAGCCGGACUUAGCCGAUUUAC
------------...((((.((.(.....(((((...((.((((..(((((((......))))))))))))).)))))......).)).)))) ( -25.40, z-score =  -2.25, R)
>droEre2.scaffold_4690 8690208 92 + 18748788
CCGAGUCUAAUGAAGGUAAUUCCGAAAUCCCGGCAAGAAUGCC-GGACUGGGCUCAUUUGUCAAGUUGGCUUAGCCAGACUUAGCCGAUUUAC
..(((((((.....((.....))......((((((....))))-))..))))))).......(((((((((.((.....)).))))))))).. ( -31.80, z-score =  -2.91, R)
>droAna3.scaffold_13248 4052626 80 - 4840945
CGGGAGAUAUUCGAGGUAAUACCCGAGUAUCCG-------GCC-GGGUCUGGCUCAUUUGUCAAGCUGGCUUAG--AGGCGGCGGCGGGC---
.....((((((((.((.....))))))))))(.-------(((-(((..((((......))))..)).(((...--.)))..)))).)..--- ( -29.50, z-score =  -0.65, R)
>consensus
CCGAGAAUGCUAAAGGUAAUUCCGAAAUCCCGGCGAGAAUGCCAGGACUUGGCUCAUUUGUCAAGUUGGCUUAGCCAGACUUAGCCGAUUUGC
..............((.....))........(((......(((..((((((((......)))))))))))...)))................. (-16.04 = -16.48 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 18,372,776 – 18,372,869
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 78.12
Shannon entropy 0.43949
G+C content 0.51296
Mean single sequence MFE -25.60
Consensus MFE -15.82
Energy contribution -17.93
Covariance contribution 2.11
Combinations/Pair 1.11
Mean z-score -1.34
Structure conservation index 0.62
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.49
SVM RNA-class probability 0.715476
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 18372776 93 - 22422827
GCAAAUCGGCUAAGUCUGGCUAAGCCAACUUGACAAAUGAGCCAUGUCCUGGCAUUCUCGCCGGGAUUUCGGAAUUACCUUUAGCAUUCCCGG
((.....((((..(((((((...))))....))).....))))..((((((((......))))))))................))........ ( -26.70, z-score =  -1.14, R)
>droSim1.chrX 14164866 93 - 17042790
GCAAAUCGGCUAAGUCUGGCUAAGCCAACUUGACAAAUGAGCCAAGUCCUGGCAUUCUCGCCGGGAUUUCGGAAUUACCUUUAGCAUUCUCGG
........((((((((((((...))))....))).......((((((((((((......)))))))))).))........)))))........ ( -28.60, z-score =  -1.97, R)
>droSec1.super_8 678697 93 - 3762037
GCAAAUCGGCUAAGUCUGGCUAAGCCAACUUGACAAAUGAGCCAAGUCCUGGCAUUCUCGCCGGGAUUUCGGAAUUACCUUUAGCAUUCUCGG
........((((((((((((...))))....))).......((((((((((((......)))))))))).))........)))))........ ( -28.60, z-score =  -1.97, R)
>droYak2.chrX 17003747 81 - 21770863
GUAAAUCGGCUAAGUCCGGCUAAGCCAACUUGACAAAUGAGCCAAGUUCUGGCAUUCUGGCCGGGAUUUCGGAAUUACCUU------------
((((.((.(.....((((((((.(((((((((.(......).)))))..))))....))))))))....).)).))))...------------ ( -25.80, z-score =  -1.99, R)
>droEre2.scaffold_4690 8690208 92 - 18748788
GUAAAUCGGCUAAGUCUGGCUAAGCCAACUUGACAAAUGAGCCCAGUCC-GGCAUUCUUGCCGGGAUUUCGGAAUUACCUUCAUUAGACUCGG
((((.((((((..(((((((...))))....))).....))))...(((-((((....)))))))......)).))))............... ( -25.20, z-score =  -1.06, R)
>droAna3.scaffold_13248 4052626 80 + 4840945
---GCCCGCCGCCGCCU--CUAAGCCAGCUUGACAAAUGAGCCAGACCC-GGC-------CGGAUACUCGGGUAUUACCUCGAAUAUCUCCCG
---.......((((..(--((..((((..........)).)).)))..)-)))-------.(((((.(((((......))))).))))).... ( -18.70, z-score =   0.11, R)
>consensus
GCAAAUCGGCUAAGUCUGGCUAAGCCAACUUGACAAAUGAGCCAAGUCCUGGCAUUCUCGCCGGGAUUUCGGAAUUACCUUUAGCAUUCUCGG
.......((((.((.....)).))))...............((((((((((((......)))))))))).))..................... (-15.82 = -17.93 +   2.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:59 2011