| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,357,828 – 18,357,944 |
| Length | 116 |
| Max. P | 0.516199 |
| Location | 18,357,828 – 18,357,944 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.07 |
| Shannon entropy | 0.48647 |
| G+C content | 0.36503 |
| Mean single sequence MFE | -19.60 |
| Consensus MFE | -9.82 |
| Energy contribution | -10.34 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.516199 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18357828 116 - 22422827 UCAUCUAAAAGUGGGACUCCUGCUUGCACGCAUUUUAUUUG----UAUUUAUACAUAAGAUCAUACCUUGCUCAUCUUAGUCCUAUAAAACACCAUCAUAAACUUACAUUUUCGUUCACU ..........(((((((...(((......))).......((----((....))))((((((((.....))...))))))))))))).................................. ( -13.90, z-score = -0.79, R) >droEre2.scaffold_4690 8675001 92 - 18748788 -----CAAAAAUGUGGCUCCCGGUUGCAAGCAUCUCGCUUU----UACUUACGAGUGUG---------UAGGCAACUUAGUCCUAUAACUAAGCAGCAUAAACAUAAAAA---------- -----.....((((.(((...((((((..((((((((....----......)))).)))---------)..))))))((((......))))))).))))...........---------- ( -21.60, z-score = -1.39, R) >droYak2.chrX 16978309 106 - 21770863 UCAUCCAAAAAUGGGAGUCCUGUUUGCAAGCAUUUUGCUUG----UACUUAUGCAUAAGGUCAUGUCUUUCGCAUCUGCGUCCUAUAAGUUAGCAACAUAAACAUUCACU---------- ..........(((((((.(((((.(((((((.....)))))----)).....))...))).)........(((....)))))))))........................---------- ( -19.30, z-score = -0.06, R) >droSec1.super_8 661617 120 - 3762037 UCAUCCAAAAGUGGGACUCCUGGUUGCAAGCAUUUUGCUUGUAAAUACUUAUACAUAAGAUCAUACCUUGCUCAUCUUAGUCCUAUAAAACAUCAUCAUAAACUUUCAUUUUCGUUCGCU ..........(((((((......((((((((.....))))))))...........((((((((.....))...))))))))))))).................................. ( -21.60, z-score = -2.25, R) >droSim1.chrX 14181199 120 - 17042790 UCAUCCAAAAGUGGGACUCCUGGUUGCAAGCAUUUUGCUUGUAAAUACUUAUACAUAAGAUCAUACCUUGCUCAUCUUAGUCCUAUAAAACAUCAUCAUAAACUUUCAUUUUCGUUCGCU ..........(((((((......((((((((.....))))))))...........((((((((.....))...))))))))))))).................................. ( -21.60, z-score = -2.25, R) >consensus UCAUCCAAAAGUGGGACUCCUGGUUGCAAGCAUUUUGCUUG____UACUUAUACAUAAGAUCAUACCUUGCUCAUCUUAGUCCUAUAAAACAGCAUCAUAAACUUUCAUUUUCGUUC_CU ..........((((((((........(((((.....)))))......((((....))))...................)))))))).................................. ( -9.82 = -10.34 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:54 2011