| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,357,077 – 18,357,175 |
| Length | 98 |
| Max. P | 0.865961 |
| Location | 18,357,077 – 18,357,175 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 66.55 |
| Shannon entropy | 0.44041 |
| G+C content | 0.50680 |
| Mean single sequence MFE | -26.55 |
| Consensus MFE | -11.99 |
| Energy contribution | -12.00 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.659561 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18357077 98 + 22422827 UGGGAAGGGGAAAAGCCAGGGGAAACGCAGUGGUGAAAGCCAUGGAAAAGCAACUGCUGCUGCCUGCGUACGGAUGGGCAAAACGAUAUGGAAAUUGA ..............(((.......((((((((((....)))))((...((((.....)))).))))))).......)))....((((......)))). ( -25.34, z-score = -0.76, R) >dp4.chrXL_group3a 306337 85 + 2690836 ------UGGAAAAUUCCAAAAGAAAUCCAGCAACGGCUCCGCCUGCAGA----CUGCAGG-GACUACGGUCGGA--GGACACAUGAUAUGGAAAUUGA ------((((....)))).......((((.((..(.((((.(((((...----..)))))-(((....))))))--)..)...))...))))...... ( -27.10, z-score = -2.71, R) >droPer1.super_39 321012 85 - 745454 ------UGGAAAAUUCCAAAAGGAAUCCAGCAACGGCUCCGCCUGCAGA----CUGCAGG-GACUACGGUCGGA--GGACACAUGAUAUGGAAAUUGA ------.......((((....))))((((.((..(.((((.(((((...----..)))))-(((....))))))--)..)...))...))))...... ( -27.20, z-score = -2.41, R) >consensus ______UGGAAAAUUCCAAAAGAAAUCCAGCAACGGCUCCGCCUGCAGA____CUGCAGG_GACUACGGUCGGA__GGACACAUGAUAUGGAAAUUGA .......((......))........((((.((.((......(((((((.....)))))))......))(((......)))...))...))))...... (-11.99 = -12.00 + 0.01)
| Location | 18,357,077 – 18,357,175 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 66.55 |
| Shannon entropy | 0.44041 |
| G+C content | 0.50680 |
| Mean single sequence MFE | -23.14 |
| Consensus MFE | -12.37 |
| Energy contribution | -11.93 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.865961 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18357077 98 - 22422827 UCAAUUUCCAUAUCGUUUUGCCCAUCCGUACGCAGGCAGCAGCAGUUGCUUUUCCAUGGCUUUCACCACUGCGUUUCCCCUGGCUUUUCCCCUUCCCA ...................(((.......(((((((((((....))))).......(((......))))))))).......))).............. ( -21.54, z-score = -2.34, R) >dp4.chrXL_group3a 306337 85 - 2690836 UCAAUUUCCAUAUCAUGUGUCC--UCCGACCGUAGUC-CCUGCAG----UCUGCAGGCGGAGCCGUUGCUGGAUUUCUUUUGGAAUUUUCCA------ .....(((((........((((--..((((.((..((-(((((..----...))))).)).)).))))..))))......))))).......------ ( -23.94, z-score = -1.75, R) >droPer1.super_39 321012 85 + 745454 UCAAUUUCCAUAUCAUGUGUCC--UCCGACCGUAGUC-CCUGCAG----UCUGCAGGCGGAGCCGUUGCUGGAUUCCUUUUGGAAUUUUCCA------ .....(((((........((((--..((((.((..((-(((((..----...))))).)).)).))))..))))......))))).......------ ( -23.94, z-score = -1.67, R) >consensus UCAAUUUCCAUAUCAUGUGUCC__UCCGACCGUAGUC_CCUGCAG____UCUGCAGGCGGAGCCGUUGCUGGAUUUCUUUUGGAAUUUUCCA______ .....(((((....(((.(((......))))))..((.(((((((.....))))))).))....................)))))............. (-12.37 = -11.93 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:53 2011