| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,356,734 – 18,356,830 |
| Length | 96 |
| Max. P | 0.500000 |
| Location | 18,356,734 – 18,356,830 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 83.16 |
| Shannon entropy | 0.22262 |
| G+C content | 0.38410 |
| Mean single sequence MFE | -20.13 |
| Consensus MFE | -14.66 |
| Energy contribution | -15.00 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 18356734 96 + 22422827 AUCUCAAA-CUGAUU-GUCUGAUGGUCUGUGAUUUGACGAUCUGAAGUUGGAAAACCUUUGCGCUACCAGAUGGAAAACUGCAGACAUGAGA-ACAUAC .(((((..-(..(((-.((.(((.(((........))).))).)))))..)......((((((...((....)).....))))))..)))))-...... ( -21.70, z-score = -1.20, R) >droSim1.chrX 14180225 87 + 17042790 AUCUCAAAACUGAAGAAUCUGAUGGUCUAUGAUUUGACGAUCUAAAGUUGUAAAACCUUUACGCUAC------------UGCGGACAUGAGAUACAUAU ((((((....(((((.....(((.(((........))).)))....(((....))))))))(((...------------.)))....))))))...... ( -19.10, z-score = -2.49, R) >droSec1.super_8 660636 87 + 3762037 AUCUCAAAACUGAAGAGUCUGAUGGUCUAUGAUUUGACGAUCUGAAGUUGUAAAACCUUUGCGCUAC------------UGCAGACAUGAGAUACAUAU ((((((...(((.((..((.(((.(((........))).))).))(((.((((.....))))))).)------------).)))...))))))...... ( -19.60, z-score = -1.46, R) >consensus AUCUCAAAACUGAAGAGUCUGAUGGUCUAUGAUUUGACGAUCUGAAGUUGUAAAACCUUUGCGCUAC____________UGCAGACAUGAGAUACAUAU ((((((...(((........(((.(((........))).)))...(((.((((.....)))))))................)))...))))))...... (-14.66 = -15.00 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:52 2011