| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,354,500 – 18,354,592 |
| Length | 92 |
| Max. P | 0.623274 |
| Location | 18,354,500 – 18,354,592 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 69.47 |
| Shannon entropy | 0.44433 |
| G+C content | 0.41664 |
| Mean single sequence MFE | -24.71 |
| Consensus MFE | -9.40 |
| Energy contribution | -12.28 |
| Covariance contribution | 2.88 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.623274 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18354500 92 + 22422827 ----GAAAAGGAGUGCGAAAAAAAUCAAAAAUGGCUUCAAAUCAGAGUGGCCAAAAAUCCAUCAAAGCAUGG----------UCACACUCGCGCCUUA---AACUUCUU---------- ----....(((.((((((.............(((((.(........).))))).....((((......))))----------......))))))))).---........---------- ( -18.80, z-score = -1.40, R) >droSec1.super_8 658394 96 + 3762037 GAAAGAAGAAUAGGGCGAAAAAAACCAAAAAUGGCUGCAAAUCAGAGUGGCCAAAAAUCCAUGAAAGCACGG----------UCACACUCGCGCCUUA---AACUUCUU---------- ..((((((..(((((((......(((.....((((..(........)..))))........((....)).))----------)........)))))))---..))))))---------- ( -26.44, z-score = -3.15, R) >droSim1.chrX 14177981 96 + 17042790 GAAAAAAGAAUAGGGCGAAAAAAACCAAAAAUGGCUGCAAAUCAGAGUGGCCAAAAAUCCAUGAAAGCAUGG----------UCACACUCGCGCCUUA---AACUUCUU---------- .....((((((((((((..............((((..(........)..)))).....(((((....)))))----------.........)))))))---...)))))---------- ( -26.40, z-score = -3.39, R) >droEre2.scaffold_4690 8671834 116 + 18748788 ---GAAAAAAACGGGAUCCUAAAAUCACAAAUGUCGGAAAAACAGAGUUGCCAGGAUUCCAACAAAGUGGGGAGGGGCAUUCCAACUCUCGCGACUAAGGCAACAACUUUAAACUUGUU ---.........((((((((......((....)).((...(((...))).))))))))))((((((((.(.(((((.........))))).).)))..(....)..........))))) ( -27.20, z-score = -0.99, R) >consensus ___AAAAAAAUAGGGCGAAAAAAACCAAAAAUGGCUGCAAAUCAGAGUGGCCAAAAAUCCAUCAAAGCAUGG__________UCACACUCGCGCCUUA___AACUUCUU__________ ...........((((((..............(((((((........))))))).....(((((....)))))...................))))))...................... ( -9.40 = -12.28 + 2.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:51 2011