| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,354,322 – 18,354,423 |
| Length | 101 |
| Max. P | 0.962058 |
| Location | 18,354,322 – 18,354,423 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.60 |
| Shannon entropy | 0.36319 |
| G+C content | 0.35086 |
| Mean single sequence MFE | -22.46 |
| Consensus MFE | -17.10 |
| Energy contribution | -16.94 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.962058 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18354322 101 + 22422827 CUCCAAAAUCUUCGACUGUAAAAUAUCAACGAAAUAUAAGAAAAACCAAUGGGUUUCACUUUAAUUGCUUACCAUUUUUACAGUCGCUU----------CUUUAAAAUUCC--------- ............(((((((((((..............(((..(((((....)))))..)))..............)))))))))))...----------............--------- ( -18.69, z-score = -3.69, R) >droSec1.super_8 658212 110 + 3762037 CUUCAAAUUCUGCGACUGUAAAAUAUCAACGAUAGAUAAGAGAAACCAAUGGGUUUCAGUUUUAUUGCUUACCAUUUUUGCAGUCGCUU----------CUUUUAGUUUGGCAAAAUUCC ..(((((((..((((((((((((......(((((((.....((((((....))))))...)))))))........))))))))))))..----------.....)))))))......... ( -28.84, z-score = -3.42, R) >droSim1.chrX 14177799 110 + 17042790 CUUCAAAUUCUGCGACUGUAAAAUAUCAACGAUAGAUAAGAGAAACCAAUGGGUUUCAGUUUUAUUGCUUACCAUUUUUGCAGUCGCUU----------CUUUUAGUUUGGCAAAAUUCC ..(((((((..((((((((((((......(((((((.....((((((....))))))...)))))))........))))))))))))..----------.....)))))))......... ( -28.84, z-score = -3.42, R) >droEre2.scaffold_4690 8671666 108 + 18748788 CUCCGAAUUCUUCGACUGUAGAAUAUCAACGAAAAAUAAGAGAAAUCCAUGGGU-UCAGCUUC-CUGCUUACCAUUUUUGCGCUCGCCU----------CUUUAAGUUUAGCAAAAUUCC ....(((((((........))))).))...(((....(((((.........(((-..(((...-..))).)))......((....))))----------)))....)))........... ( -14.80, z-score = 1.08, R) >droYak2.chrX 16974842 120 + 21770863 CUCCGAAUUCUUCGACUGCAAAAUAUCAAUGCAAAAUAAGUGGAAUCCAUGGGUCUCAGCUGCACUGCUUACCAUUUUUGCGAUCGCUUUAAGUUUAUUCUUUAAGUUUAGUAAAAUUCU ....(((((...(((.(((((((.......(((.....((((..(((....)))..)).))....))).......))))))).))((((.(((......))).))))...)...))))). ( -21.14, z-score = -0.25, R) >consensus CUCCAAAUUCUUCGACUGUAAAAUAUCAACGAAAAAUAAGAGAAACCAAUGGGUUUCAGUUUCAUUGCUUACCAUUUUUGCAGUCGCUU__________CUUUAAGUUUAGCAAAAUUCC ............(((((((((((..................((((((....))))))(((......)))......))))))))))).................................. (-17.10 = -16.94 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:50 2011