| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,347,696 – 18,347,801 |
| Length | 105 |
| Max. P | 0.690012 |
| Location | 18,347,696 – 18,347,801 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 70.29 |
| Shannon entropy | 0.51506 |
| G+C content | 0.48803 |
| Mean single sequence MFE | -31.58 |
| Consensus MFE | -15.86 |
| Energy contribution | -16.26 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.690012 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18347696 105 + 22422827 ----------GGUGGUGAAAGUGGGUGGUGUAGGUGGUGCACCACCCUCUUGCUGUGUUUACUG-UAUGUUUGGCUUCGCAUUCAGUGUGAAUUGCUGUGGAAAUGAAUUUACGUC ----------.(..((..(((.((((((((((.....)))))))))).)))))..).......(-((.(((((..((((((..((((....)))).))))))..))))).)))... ( -33.40, z-score = -2.13, R) >droSim1.chrX 14171441 115 + 17042790 GGUGGUGAAAGUGGGUAAAAGUGGGAGGUGUAGGUGGUGCACCACCCUCCUGCUGUGUUUACUG-UAUGUUUGGCUUCGCUUUCAGUGUGAAUUGCUGUGGAAAUGAAUUUACGUC ...(.((((((((((((((((..(((((.((.((((...)))))))))))..))...))))))(-(.......))..)))))))).)(((((((.(.((....))))))))))... ( -35.60, z-score = -2.07, R) >droSec1.super_8 650977 105 + 3762037 ----------GGUGGUGAAAGUGGGAGGUGUAGGUGGUGCACCACCCUCCUGCUGUGUUUACUG-UAUGUUUGGCUUCGCUUUCAGUGUGAAUUGCUGUGGAAAUGAAUUUACGUC ----------(((((....((..(((((.((.((((...)))))))))))..))....)))))(-((.(((((..(((((...((((....))))..)))))..))))).)))... ( -34.00, z-score = -2.22, R) >droEre2.scaffold_4690 8665405 86 + 18748788 -------------GGUGGU-GUAGGUGGUGGUGGUGGUGCACCAACAACCCGCUGUGUAAAUC----------------CGUUCAGUGUAAAUUGCCGUGGAAAUGAAUUAACGUC -------------((..((-...(((..(((((......)))))...)))(((((........----------------....)))))...))..))................... ( -20.70, z-score = 0.61, R) >droAna3.scaffold_13248 4015505 104 - 4840945 ----------GGCGAUAGAGAUGGGGGGAGUAA--GGCCUCCUAUCCUCCUAUCCAAUGGAGCACUAUGUUUGGCUUCGCCUUUGGUGUGAAUUGCUCUGGAAAUGAGUUUACGUC ----------((((((((.(((((((((.....--..)))))))))...)))))....(((((.(.......)))))))))...(..((((...((((.......))))))))..) ( -34.20, z-score = -1.13, R) >consensus __________GGUGGUGAAAGUGGGAGGUGUAGGUGGUGCACCACCCUCCUGCUGUGUUUACUG_UAUGUUUGGCUUCGCUUUCAGUGUGAAUUGCUGUGGAAAUGAAUUUACGUC .............(((((.(((((((((.((.((((...)))))))))))))))....)))))........................(((((((............)))))))... (-15.86 = -16.26 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:48 2011