| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,340,843 – 18,340,941 |
| Length | 98 |
| Max. P | 0.641387 |
| Location | 18,340,843 – 18,340,941 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 57.81 |
| Shannon entropy | 0.66864 |
| G+C content | 0.52473 |
| Mean single sequence MFE | -31.02 |
| Consensus MFE | -14.76 |
| Energy contribution | -11.00 |
| Covariance contribution | -3.76 |
| Combinations/Pair | 1.67 |
| Mean z-score | -0.72 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.641387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18340843 98 + 22422827 CGCUGGCAAUCGCUCAUUAGCGCUGGCCAAGGGAUUGGCACACGGGCUGAGUGAUUGCGAAUCGGGUUACUCGGACAGGCGGCAC--ACUGAUUGGUAAA-------- .(((((((((((((((...((.((((((((....))))).)).).)))))))))))))...(((((...))))).....))))..--.............-------- ( -36.80, z-score = -2.44, R) >droSim1.chrX_random 4745440 98 + 5698898 CGCUGGCAAUCGCUCAUUAGCGCUGGCCAAGGGAUUGCCACACGGGCUGAGUGAUUGCGAAUCGGGUUACGCGGACAGGUAGCGC--ACUGAUUGGUAAG-------- .(((.(((((((((((...((.(((((.((....))))))...).))))))))))))).((((((....(((.........))).--.)))))))))...-------- ( -32.40, z-score = -0.17, R) >droSec1.super_8 644224 98 + 3762037 CGCUGGCAAUCGCUCAUUAGCGCUGGCCAAGGGAUUGCCACACGGGCUGAGUGAUUGCGAAUCGGGUUACGCGGACAGGCAGCGC--ACUGAUUGGUAAA-------- .(((.(((((((((((...((.(((((.((....))))))...).))))))))))))).((((((....(((.........))).--.)))))))))...-------- ( -32.40, z-score = 0.04, R) >dp4.chrXL_group3a 292316 106 + 2690836 UCCUAACCCUAUUUUAGGAGUAUUGGUAGAA-GAUGAAUG-GUGAAAGGAGGAAAGCAGUGUCGGAUUACACCUCUCUUCCUCCUCUAUUCCCCACUCAAUCGCUCAA ((((((.......)))))).........((.-(((((.((-(.(((((((((((((..((((......))))..)).))))))))...))).))).)).)))..)).. ( -29.70, z-score = -1.36, R) >droPer1.super_39 306832 101 - 745454 UCCUAACCCUAUUUUAGGAGUAUUGGUAGAAAGAUGAAUG-GUGAAAGGAGGAAAGCAGUGUCGGAUUACUCCUCUCUUCCUCCUCUAUCCCCCACUCAAUC------ ((((((.......))))))...............(((.((-(.((.((((((((((.((((......)))).))...))))))))...))..))).)))...------ ( -23.80, z-score = 0.32, R) >consensus CGCUGGCAAUCGCUCAUUAGCGCUGGCCAAGGGAUUGACACACGGGCUGAGUGAUUGCGAAUCGGGUUACGCGGACAGGCAGCCC__ACUGAUUGGUAAA________ ...((((...((((....))))...)))).....(((.((..(((((((..((.(((((..........))))).))..)))).....)))..)).)))......... (-14.76 = -11.00 + -3.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:47 2011