Locus 15304

Sequence ID dm3.chrX
Location 18,338,588 – 18,338,687
Length 99
Max. P 0.554078
window21083

overview

Window 3

Location 18,338,588 – 18,338,687
Length 99
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 98.15
Shannon entropy 0.03154
G+C content 0.58081
Mean single sequence MFE -26.68
Consensus MFE -25.85
Energy contribution -25.85
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.06
Structure conservation index 0.97
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.12
SVM RNA-class probability 0.554078
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 18338588 99 - 22422827
CCCGCCUAUCAGUACCAGUACAGUCGCAAUCGGCUGAGCCGCAAGAGUUCCGGCUCCAGUUCGGGCCACCAUCAUCACGGUCAUCAUCAUGGCCAGCAU
...((((....(((....)))(((((....)))))((((((.........))))))......))))............((((((....))))))..... ( -26.30, z-score =  -0.93, R)
>droSec1.super_8 641913 99 - 3762037
CCCGCCUAUCAGUACCAGUACAGUCGCAAUCGGCUGAGCCGCAAGAGUUCCGGCUCCAGUUCGGGGCACCAUCAUCACGGUCAUCAUCAUGGCCAGCAU
...((((....(((....))).........(((((((((((.........))))).))).)))))))...........((((((....))))))..... ( -27.40, z-score =  -0.87, R)
>droYak2.chrX 16957041 99 - 21770863
CCCGCGUAUCAGUAUCAGUACAGUCGCAAUCGGCUGAGCCGCAAGAGUUCCGGCUCCAGUUCGGGUCACCAUCAUCACGGUCAUCAUCAUGGCCAGCAU
((((((...(.(((....))).).)))....((((((((((.........))))).))))).))).............((((((....))))))..... ( -26.70, z-score =  -1.51, R)
>droEre2.scaffold_4690 8656523 99 - 18748788
CCCGCCUAUCAGUACCAGUACAGUCGCAAUCGGCUGAGCCGCAAGAGUUCCGGCUCCAGUUCGGGCCACCAUCAUCACGGUCAUCAUCAUGGCCAGCAU
...((((....(((....)))(((((....)))))((((((.........))))))......))))............((((((....))))))..... ( -26.30, z-score =  -0.93, R)
>consensus
CCCGCCUAUCAGUACCAGUACAGUCGCAAUCGGCUGAGCCGCAAGAGUUCCGGCUCCAGUUCGGGCCACCAUCAUCACGGUCAUCAUCAUGGCCAGCAU
((((.......(((....)))(((((....)))))((((((.........)))))).....)))).............((((((....))))))..... (-25.85 = -25.85 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:46 2011