| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,332,515 – 18,332,614 |
| Length | 99 |
| Max. P | 0.602295 |
| Location | 18,332,515 – 18,332,614 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 85.09 |
| Shannon entropy | 0.20407 |
| G+C content | 0.41792 |
| Mean single sequence MFE | -30.53 |
| Consensus MFE | -22.34 |
| Energy contribution | -22.90 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.602295 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18332515 99 - 22422827 UUGGGGGUGACUCUUCGGCGGUGACCUUUUUAAAGAGCAACAAAUAAGGUUGAGUUCUUAAAGGUAUGCCACUUUAAAAUGGUAACCGGAUUCCAAGUU--------- ..((((....))))..((((((.(((.((((((((.(((((...(((((......)))))...)).)))..)))))))).))).))))....)).....--------- ( -28.10, z-score = -1.55, R) >droSim1.chrX 14145834 106 - 17042790 -UUGGGGUAACUCUUUAGCGGUGACCUUUUCAAAGAGCUUCAGAAAAGUUUGAGUUCUUAAAGGUAUGCCACUUUAAAAUGGU-ACCCGAUUCCAAGUUAUGGGUCAC -...(((((.((.(((((.((((((((((...(((((((.((((....))))))))))))))))).)))).))...))).)))-))))(((.(((.....)))))).. ( -30.40, z-score = -1.89, R) >droSec1.super_8 636150 106 - 3762037 -UUGGGGUGACUCGUUAGCGGUGACCUUUUCAAAGAGCUACAGAAAAGUUUGAGUUCUUAAAGGUAUGCCACUUUAGAAUGGU-ACCCGAUUCCAAGUUAUGGGUCAC -.....(((((((((.(((((((((((((...(((((((.((((....))))))))))))))))).))))......((((.(.-...).))))...)))))))))))) ( -33.10, z-score = -2.29, R) >consensus _UUGGGGUGACUCUUUAGCGGUGACCUUUUCAAAGAGCUACAGAAAAGUUUGAGUUCUUAAAGGUAUGCCACUUUAAAAUGGU_ACCCGAUUCCAAGUUAUGGGUCAC ....((((.(((....((.((((((((((...(((((((.((((....))))))))))))))))).)))).)).......))).)))).................... (-22.34 = -22.90 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:44 2011