| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,332,375 – 18,332,491 |
| Length | 116 |
| Max. P | 0.895955 |
| Location | 18,332,375 – 18,332,491 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 78.31 |
| Shannon entropy | 0.28499 |
| G+C content | 0.43172 |
| Mean single sequence MFE | -30.50 |
| Consensus MFE | -25.39 |
| Energy contribution | -26.40 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.895955 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18332375 116 - 22422827 AGUUGAGCUCACAAGCAUUUGUAGUUUAAAGACGGAGUACACGUUUUUUUUGACUCUAAUGCCGUUUGGGGUCACCUUUUACCAAAGGUGAUUGGCCUUAAUUGGCUACUACAUUG .......((((...(((((.(.((((.(((((((.......)))))))...))))).)))))....))))(((((((((....)))))))))(((((......)))))........ ( -32.90, z-score = -2.19, R) >droSim1.chrX 14145704 100 - 17042790 -------------AAUACGC-CACUUUAAAGUCGGAGUGCAAG--UUUUUUGACUCUGAUGCUGUUUGGGGUCACCUUGUACUGAGGGUGGUUGGCCUUAAUUGGCUACCAGAUUG -------------.....((-((((((........((((((((--.....((((((..(......)..)))))).)))))))).))))))))(((((......)))))........ ( -31.80, z-score = -1.84, R) >droSec1.super_8 636020 100 - 3762037 -------------AAUAUGC-CACUUUAAAGUCGGAGUGCAAG--UUUUUUGACUCUGAUGCUGUUUGGGGUCACCUUGUACUGAGGGUGAUUGGCCUUAAUUGUCUACCAGAUUG -------------.......-.........((((((((.((((--...))))))))))))...(((((((((((((((......)))))))))(((.......)))..)))))).. ( -26.80, z-score = -1.02, R) >consensus _____________AAUAUGC_CACUUUAAAGUCGGAGUGCAAG__UUUUUUGACUCUGAUGCUGUUUGGGGUCACCUUGUACUGAGGGUGAUUGGCCUUAAUUGGCUACCAGAUUG ..............................((((((((.((((.....))))))))))))...(((((((((((((((......)))))))))((((......)))).)))))).. (-25.39 = -26.40 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:43 2011