| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,805,199 – 11,805,253 |
| Length | 54 |
| Max. P | 0.891221 |
| Location | 11,805,199 – 11,805,253 |
|---|---|
| Length | 54 |
| Sequences | 6 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 82.98 |
| Shannon entropy | 0.31256 |
| G+C content | 0.51966 |
| Mean single sequence MFE | -16.75 |
| Consensus MFE | -12.95 |
| Energy contribution | -14.03 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.891221 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11805199 54 + 23011544 ------AGUGGGCGGGUUUCGUUUCGGGCAUGAAAAGUACUGAUGAAGCCAAGCACAGAA ------.(((....(((((((..((((...(....)...)))))))))))...))).... ( -14.60, z-score = -1.21, R) >droSim1.chr2L 11615437 54 + 22036055 ------AGUGGGCGGGUUUCGUUUCGGGCAUGUAAAGUGCUGAUGAAGCCAAGCACAGAA ------.(((....(((((((((...(((((.....))))))))))))))...))).... ( -18.40, z-score = -2.29, R) >droSec1.super_3 7194338 54 + 7220098 ------AGUGGGCGGGUUUCGUUUCGGGCAUGUAAAGUGCUGAUGAAGCCAAGCACAGAA ------.(((....(((((((((...(((((.....))))))))))))))...))).... ( -18.40, z-score = -2.29, R) >droYak2.chr2L 8225734 54 + 22324452 ------AGUGGGCGGGUUUCGUUUGGGGCAUGUAAAGUGCUGAUGAAGCCAAGCACAGAG ------.(((....(((((((((...(((((.....))))))))))))))...))).... ( -18.40, z-score = -2.60, R) >droEre2.scaffold_4929 13031087 54 - 26641161 ------AGUGGGCGGGUUUCGUUUCGAGCAUGUAAAGUGCUGAUGAAGCCAAGCACAGAA ------.(((....(((((((((...(((((.....))))))))))))))...))).... ( -18.40, z-score = -2.42, R) >dp4.chr4_group3 972135 57 + 11692001 GGUGGUUGGGGGGAGGUAUUCGGGCGGACUUGUAAAAUUCUGAUGAAGCCAGGCACA--- .(((.((((.........((((..((((.((....)).)))).)))).)))).))).--- ( -12.30, z-score = 0.16, R) >consensus ______AGUGGGCGGGUUUCGUUUCGGGCAUGUAAAGUGCUGAUGAAGCCAAGCACAGAA .......(((....(((((((((...(((((.....))))))))))))))...))).... (-12.95 = -14.03 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:43 2011