Locus 153

Sequence ID dm3.chr2L
Location 1,065,800 – 1,065,890
Length 90
Max. P 0.853715
window217

overview

Window 7

Location 1,065,800 – 1,065,890
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 88.15
Shannon entropy 0.20052
G+C content 0.53141
Mean single sequence MFE -30.51
Consensus MFE -21.58
Energy contribution -24.07
Covariance contribution 2.50
Combinations/Pair 1.08
Mean z-score -2.38
Structure conservation index 0.71
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.92
SVM RNA-class probability 0.853715
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 1065800 90 - 23011544
CGAUUGACUUUCGUAUCCACCAGAUCGCUUGGCCAGCUCGUUUGCUUGGAACUUCCCGGGUCCCAGUGGCAAGUGUACUGUAGAAGUCGA
...((((((((..((..(((..(.(((((.(((((((......)))(((......))))).)).))))))..)))...))..)))))))) ( -24.30, z-score =   0.12, R)
>droEre2.scaffold_4929 1107490 78 - 26641161
CGAUUGACUUUCGUAUCCACCAGAUCGCUUGGCCAGCUCGUUUGCCUGGGACUUCCC-------AGUGCCAAGUGU-----AUAAGACGA
..........((((...........((((((((..((......))(((((....)))-------)).)))))))).-----.....)))) ( -23.33, z-score =  -1.66, R)
>droSec1.super_14 1019230 90 - 2068291
CGAUUGACUUUCGUAUCCACCAGAUCGCUUGGCCAGCUCGUUUGCCUGGAACUUCCCAGGUUGCAGUGCCAAGUGUUCUGUGGAAGACGA
..........((((.(((((.(((.((((((((..(((.((..((((((......)))))).))))))))))))).))))))))..)))) ( -39.90, z-score =  -4.74, R)
>droSim1.chr2L 1036493 90 - 22036055
CGAUUGACUUUCGUAUCCACCAGAUCGCUUGGCCAGCUCGUUUGCCUGGAACUUCCCAGGUUGCAGUGCCAAGUGUUCUGCAGAAGACGA
..........((((......((((.((((((((..(((.((..((((((......)))))).))))))))))))).))))......)))) ( -34.50, z-score =  -3.24, R)
>consensus
CGAUUGACUUUCGUAUCCACCAGAUCGCUUGGCCAGCUCGUUUGCCUGGAACUUCCCAGGUUGCAGUGCCAAGUGUUCUGUAGAAGACGA
..........((((......((((.((((((((..(((.....((((((......))))))...))))))))))).))))......)))) (-21.58 = -24.07 +   2.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:39 2011