| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,323,304 – 18,323,401 |
| Length | 97 |
| Max. P | 0.639642 |
| Location | 18,323,304 – 18,323,401 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 86.62 |
| Shannon entropy | 0.17987 |
| G+C content | 0.37702 |
| Mean single sequence MFE | -18.17 |
| Consensus MFE | -14.48 |
| Energy contribution | -14.70 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.639642 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18323304 97 - 22422827 UGUUCAAUGUGUUCAAAGUGCACUUAGCAAAUUUUAAUCUGCCAAGCUGCGCCUUUCUUUCGAUCCCGAUAUCUAAAGGAUAUAAUAAACCCCUAUA .......(((((((...((((((((.(((.((....)).))).))).))))).......(((....)))........)))))))............. ( -16.80, z-score = -1.70, R) >droSim1.chrX 14141982 90 - 17042790 UGUUCAAUGUAUUU-AAGUGCACUUAGCAAAUUUUAAUAUGC--AGCUGCGCCUUUCAUUGGAACCCGAUAUCCAAUGGAU---AUAAACCCCUAU- .......((((((.-..(((((((..(((.((....)).)))--)).)))))....(((((((........))))))))))---))).........- ( -17.30, z-score = -1.23, R) >droSec1.super_8 632394 89 - 3762037 UGUUCAAUGUAUUU-AAGUGCACCUAGCAAAUUUUAAUAUGC--AGCUGCGCCUUUCAUUGGAACCCGAUAUCCAAUGGAU---AUAUACCCCUG-- ......(((((((.-..(((((.((.(((.((....)).)))--)).)))))....(((((((........))))))))))---)))).......-- ( -20.40, z-score = -2.29, R) >consensus UGUUCAAUGUAUUU_AAGUGCACUUAGCAAAUUUUAAUAUGC__AGCUGCGCCUUUCAUUGGAACCCGAUAUCCAAUGGAU___AUAAACCCCUAU_ .................(((((((..(((.((....)).)))..)).)))))..(((((((((........)))))))))................. (-14.48 = -14.70 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:37 2011