| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,321,757 – 18,321,857 |
| Length | 100 |
| Max. P | 0.528661 |
| Location | 18,321,757 – 18,321,857 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 61.29 |
| Shannon entropy | 0.64321 |
| G+C content | 0.34407 |
| Mean single sequence MFE | -19.64 |
| Consensus MFE | -9.68 |
| Energy contribution | -10.24 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.56 |
| Mean z-score | -0.66 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.528661 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18321757 100 - 22422827 --------------AUAUAUACCUUUUUAUUUGCACAGAGGGAAUUGUGCAACUGUGAAUCACAUUAAUUAGCACACAAUGUGCGUAAAAGGAUGUAUCCUUUUUAUGUUAGUU --------------((((((.((((((...((((((((......)))))))).((((...)))).......((((.....))))..))))))))))))................ ( -21.70, z-score = -1.15, R) >droSim1.chrX 14140465 104 - 17042790 CUAAAAUAUCAUAUAUACAUACCUUUUUAUUUGCGCAGAGGGAAUUGUGCAACUGUGAAUCACUUUAAUUAGCACACAAUGUGCGUGAAAGGAGGUGUCCUUUU---------- ..................((((((((((..(..((((.(..(...(((((.....((((....))))....))))))..).))))..)))))))))))......---------- ( -23.30, z-score = -1.10, R) >droSec1.super_8 630870 99 - 3762037 -----CUAAAAUAUAUACAUACCUUUUUAUUUGCGCAGAGGGAAUUGUGCAACUGUGAAUCACUUUAAUUAGCACACAAUGUGCGUGAAAGGAGGUGUCCUUUU---------- -----.............((((((((((..(..((((.(..(...(((((.....((((....))))....))))))..).))))..)))))))))))......---------- ( -23.30, z-score = -1.38, R) >droEre2.scaffold_4690 8645030 93 - 18748788 -----------CUAGAACACACCUAUUUAUUAACGCAGAAGGAAUCAAGCAAGUGUAAAUCACUUUAAUUAGCACAUAAAGCGAGUGAAAGGAUGUAUCCUUUU---------- -----------.......((((((.((((((..(((.((.....))..(((((((.....)))))......)).......)))))))))))).)))........---------- ( -13.30, z-score = -0.14, R) >droAna3.scaffold_13248 3976328 95 + 4840945 -----------AUAAAAUAAAUCC-CUGACUCCUUGAACUCGGAUUAAAGGACUUUGAAUGGGAAAUAUUUGAGAUUAGAGUACUCGAAGGGAAUUAGAAUGUUCUA------- -----------......(((.(((-((.((((..(((.(((((((.......((......)).....))))))).)))))))......))))).)))..........------- ( -16.60, z-score = 0.46, R) >consensus ___________UAAAUACAUACCUUUUUAUUUGCGCAGAGGGAAUUGUGCAACUGUGAAUCACUUUAAUUAGCACACAAUGUGCGUGAAAGGAGGUAUCCUUUU__________ .....................((((((...((((((((......))))))))...................((((.....))))..))))))...................... ( -9.68 = -10.24 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:36 2011