| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,320,018 – 18,320,137 |
| Length | 119 |
| Max. P | 0.708897 |
| Location | 18,320,018 – 18,320,137 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 124 |
| Reading direction | reverse |
| Mean pairwise identity | 77.36 |
| Shannon entropy | 0.43589 |
| G+C content | 0.54606 |
| Mean single sequence MFE | -34.07 |
| Consensus MFE | -21.22 |
| Energy contribution | -22.33 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.708897 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18320018 119 - 22422827 CCAAAUUAGCAUCGUGUCCAUUGUUUGGACAAUACACCAGCCAGCCCCAGGGCUGCUCGCCCAAUGUGCCACUUAAAGGUUGUCAAUGGCAACCACCUGAGAUGGCCUGACC-ACCACCA---- ........((....((((((.....)))))).......(((.((((....))))))).)).......((((((((..((((((.....))))))...)))).))))......-.......---- ( -36.20, z-score = -1.17, R) >droAna3.scaffold_13248 3974520 121 + 4840945 CUAAAUUAGCAUCGUGGCCAUUGUUUGGACAAUUCUACGAGUCCUUCGAGAACGGACGACCCCACA---CACUUAACGGUUGUCAGCGGCAACCACCUGUCACAAGACGGGGGGUCACCCACGA ...........(((((((((.....)))............((((.........))))((((((...---........((((((.....))))))..(((((....)))))))))))..)))))) ( -43.20, z-score = -2.81, R) >droEre2.scaffold_4690 8643454 101 - 18748788 CCAAAUUAGCAUCGUGUCCAUUGUUUGGACAACACA--------------AGCUGCCCGCCCCAUGCGCCACUUAAAGGUUGUCAACGGCAACCACCUGACCUGGCCUAUCC-ACC-------- .......(((....((((((.....)))))).....--------------.)))((((((.....))).........((((((.....)))))).........)))......-...-------- ( -24.80, z-score = -0.78, R) >droYak2.chrX 16943544 115 - 21770863 CCAAAUUAGCAUCCUGUCCAUUGUUUGGACAAUACACCAGCC---UCCGGGGCU--CCGCCCAAUGCGGCACUUAAAGGUUGUCAACGGCAACCACCUGACAUGGCCUAACCAACCACCA---- (((..((((.....((((((.....))))))........(((---.(..((((.--..))))...).))).......((((((.....))))))..))))..)))...............---- ( -32.10, z-score = -1.00, R) >droSec1.super_8 629172 119 - 3762037 CCAAAUUAGCAUCGUGUCCAUUGUUUGGACAAUACACCAGCCAGCCCCAGGGCUCCCCGUCCAAUGCGCCACUUAAAGGUUGUCAACGGCAACCACCUGACAUGGCCUGACC-ACCACCA---- ........((((..((((((.....))))))...........((((....)))).........))))((((.(((..((((((.....))))))...)))..))))......-.......---- ( -30.50, z-score = -0.35, R) >droSim1.chrX 14138769 119 - 17042790 CCAAAUUAGCAUCGUGUCCAUUGUUUGGACAAUACACCAGCCAGCCCGAGGGCUCCCCGCCCAAUGCGCCACUUAAAGGUUGUCAACGGCAACCACCUGAGAUGGCCUGACC-ACCAGCA---- ........((....((((((.....))))))......(((...((....((((.....))))...))((((((((..((((((.....))))))...)))).)))))))...-....)).---- ( -37.60, z-score = -1.97, R) >consensus CCAAAUUAGCAUCGUGUCCAUUGUUUGGACAAUACACCAGCCAGCCCCAGGGCUGCCCGCCCAAUGCGCCACUUAAAGGUUGUCAACGGCAACCACCUGACAUGGCCUGACC_ACCACCA____ (((..((((.....((((((.....))))))..................((((.....))))...............((((((.....))))))..))))..)))................... (-21.22 = -22.33 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:35 2011