| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,315,008 – 18,315,174 |
| Length | 166 |
| Max. P | 0.742584 |
| Location | 18,315,008 – 18,315,114 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 71.35 |
| Shannon entropy | 0.53048 |
| G+C content | 0.58514 |
| Mean single sequence MFE | -38.66 |
| Consensus MFE | -24.97 |
| Energy contribution | -25.89 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.34 |
| Mean z-score | -0.82 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.742584 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18315008 106 - 22422827 -------GAGCGGUGAGCGGUGAGCUGUGGGCUUGAAGUGGGGCCUGAGGACCUGGCAGC-UUUUCGAAAGGC-ACAAAAUCGGGCAGUGGGCCCGAUUUUUGGCCUGGGAGGCC -------..(((((..((((....))))((((((......))))))....)))..)).((-((..(...((((-..((((((((((.....))))))))))..)))))..)))). ( -41.90, z-score = -0.60, R) >droEre2.scaffold_4690 8638830 113 - 18748788 GAGCUGUGAGCUGUGAUCUGUGAGCUCUGGGCUUGAAGUGGGGCCUGAGGACCUGGCAGC-UUUUCGAAAGGC-ACAAAAGCGGGCAGUGGGCCCGAUUUUUGGACUGGGAGGCC (((((..(((((..........)))))..))))).......(((((.....((..((.((-(((....)))))-.(((((((((((.....))))).))))))).)..))))))) ( -41.30, z-score = -0.06, R) >droYak2.chrX 16940330 80 - 21770863 -------GAGCUAUAAGCUAUAAGCUGUGAGCU-----GGGGGCCUGAGGACCUGGCAGC-UUUUCGAAAGGC-ACAAAAUCGGGCAGUGGGCC--------------------- -------.((((...(((.....)))...))))-----...((((((..(.(((((....-...((....)).-......))))))..))))))--------------------- ( -25.34, z-score = 0.11, R) >droSec1.super_8 624210 106 - 3762037 -------GAGUUGUGAGCGGUGAGCUCUGGGCUUGAAGUGGGGCCUGAGGACCUGGCAGC-UUUUCGAAAGGC-ACAAAAUCGGGCAGUGGGCCCGAUUUUUGGCCUGGGAGGCC -------(((((..((((.....))))..)))))...((.(((((...)).))).)).((-((..(...((((-..((((((((((.....))))))))))..)))))..)))). ( -45.10, z-score = -1.61, R) >droSim1.chrX 14128827 106 - 17042790 -------GAGUUGUGAGCGGUGAGCUCUGGGCUUGAAGUGGGGCCUGAGGACCUGGCAGA-UUUUCGAAAGGC-ACAAAAUCGGGCAGUGGGCCCGAUUUUUGGCCUGGGAGGCC -------(((((..((((.....))))..))))).......(((((.....((.(((...-...((....))(-(.((((((((((.....))))))))))))))).)).))))) ( -41.20, z-score = -1.10, R) >dp4.chrXL_group3a 273470 101 - 2690836 -------GAGUUUUAAGCUUGGAGCUUGGAGCUCGGAGCAGGGACUG--GGUUUGGUUUCGCUUUCGAAUGUCGGCAAAGUGGGGCUCCAUUCAGUGUUAGGAGGCCUGU----- -------(((((((((((.....)))))))))))...(((((.((((--(((..(((..((((((((.....)))..)))))..)))..))))))).........)))))----- ( -37.10, z-score = -1.64, R) >consensus _______GAGCUGUGAGCGGUGAGCUCUGGGCUUGAAGUGGGGCCUGAGGACCUGGCAGC_UUUUCGAAAGGC_ACAAAAUCGGGCAGUGGGCCCGAUUUUUGGCCUGGGAGGCC .......(((((..((((.....))))..)))))(((((.(((((((..(.(((((........((....))........))))))..))))))).))))).............. (-24.97 = -25.89 + 0.92)
| Location | 18,315,081 – 18,315,174 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 66.88 |
| Shannon entropy | 0.45015 |
| G+C content | 0.58863 |
| Mean single sequence MFE | -35.93 |
| Consensus MFE | -14.39 |
| Energy contribution | -15.18 |
| Covariance contribution | 0.79 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.622474 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18315081 93 + 22422827 CACUUCAAGCCCACAGCUCACCGCUCACCGCUCACAACUUU-----GCAAUCUCCGACUCUUGGGCUGAAGCUGGAACUGGGG---------CUCGACUAAAGCCCC (((((((.(((((.(((.....)))....((..........-----)).............)))))))))).)).....((((---------((.......)))))) ( -27.10, z-score = -1.77, R) >droYak2.chrX 16940382 95 + 21770863 -----CCAGCUCACAGCUUAUAGCUUAUAGCUCACAGCCCCCAGUUGCAAUCUCCGACUGUGGGGCUGGAGUUGGGGCUCCCA-------CUCUUGGCUUAAACCCC -----..(((((.((((((..(((.....)))..(((((((((((((.......)))))).)))))))))))))))))).(((-------....))).......... ( -37.90, z-score = -2.63, R) >droSec1.super_8 624283 107 + 3762037 CACUUCAAGCCCAGAGCUCACCGCUCACAACUCUGAGCCCCCAGUGGCAAUCUCCAACUCUUGGGCUGGAGGUGGAGCUGGGGGCUCCCACUCUCGACUAAUGCCCC ........((...((((.....))))........(((((((((((....(((((((.((....)).)))))))...)))))))))))...............))... ( -42.80, z-score = -1.93, R) >consensus CACUUCAAGCCCACAGCUCACCGCUCACAGCUCACAGCCCCCAGU_GCAAUCUCCGACUCUUGGGCUGGAGCUGGAGCUGGGG_______CUCUCGACUAAAGCCCC .......(((.....)))....((((.((((((.((((((......................))))))))))))))))............................. (-14.39 = -15.18 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:34 2011