| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,298,931 – 18,298,987 |
| Length | 56 |
| Max. P | 0.738416 |
| Location | 18,298,931 – 18,298,987 |
|---|---|
| Length | 56 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 78.75 |
| Shannon entropy | 0.38563 |
| G+C content | 0.50357 |
| Mean single sequence MFE | -15.64 |
| Consensus MFE | -12.68 |
| Energy contribution | -12.32 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.738416 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18298931 56 - 22422827 UUUGCUGUGUGAGUGAUCGCGCGAUCGAUUAUUCCCUAGCUGAGUAAUGGGUAGCA ..((((((((((....)))))).(((.(((((((.......))))))).))))))) ( -19.10, z-score = -2.46, R) >droSec1.super_8 608312 56 - 3762037 CUUGCUGUGUGAGUGAUCGCACGAUCGAUCAUUUCCUCGCUGAGUGAUGGGUAGCA ..((((((((((....)))))).(((.(((((((.......))))))).))))))) ( -19.90, z-score = -1.79, R) >droYak2.chrX 16926549 56 - 21770863 UUUUCUGUGUGAGCGAUCGCCUGAUCGAUCAUUCCCCCGCUGAGUGAUGGGUAGCA ......((((((.(((((....))))).))))...(((((.....).))))..)). ( -12.50, z-score = 0.32, R) >droEre2.scaffold_4690 8618427 56 - 18748788 UUUUCUGUGUGAGUGAUCGCCUGAUCGAUCAUUCCGUCGCUGAGUGAUGGGUAGCA ........(.(((((((((......))))))))))((..((.(....).))..)). ( -16.60, z-score = -1.16, R) >droAna3.scaffold_13248 3950555 56 + 4840945 UUUAACCUUUGACCUUUUGCAAGACUGAUCAUGCCCCGAGCGAGUGAUGGGUAGCA .................(((...(((.(((((((.....))..))))).))).))) ( -10.10, z-score = -0.08, R) >consensus UUUGCUGUGUGAGUGAUCGCACGAUCGAUCAUUCCCUCGCUGAGUGAUGGGUAGCA .....(((((((....)))))))(((.(((((((.......))))))).))).... (-12.68 = -12.32 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:33 2011