| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,297,478 – 18,297,643 |
| Length | 165 |
| Max. P | 0.693591 |
| Location | 18,297,478 – 18,297,568 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 89.86 |
| Shannon entropy | 0.13824 |
| G+C content | 0.31980 |
| Mean single sequence MFE | -15.37 |
| Consensus MFE | -14.60 |
| Energy contribution | -14.93 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.693591 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18297478 90 + 22422827 AUCAAAGACCAGUUCGAAUUGAGUUAUUUGAAUUGAUCUAGUAUUGUU---UACUACUAAUAUCGCUCCUUAUGAGCUUAACACUCUGAAUUC .(((.((..((((((((((......))))))))))...(((((.....---)))))........((((.....))))......)).))).... ( -18.10, z-score = -1.95, R) >droSim1.chrX 14111472 93 + 17042790 AUCAAAGACCAGUUCGAAUUGAGUUAUUUGAAUUGAUCAUAUAGCAUUGUUUACUACUUAUAUCGCUCCAUUUGAGCUUAACACUCUGAAUUC .(((..((.((((((((((......)))))))))).))..........................((((.....)))).........))).... ( -16.20, z-score = -1.11, R) >droSec1.super_8 606801 89 + 3762037 AUCAAAGACCAGUACGAAUUGAGUUAUUUGAAUUGAUCAUAUAUCAUU----ACUACUUAUAUCGCUCCAUUUGAGCUUAACACUCUGAAUUC .(((..((.((((.(((((......))))).)))).))..........----............((((.....)))).........))).... ( -11.80, z-score = -0.28, R) >consensus AUCAAAGACCAGUUCGAAUUGAGUUAUUUGAAUUGAUCAUAUAUCAUU___UACUACUUAUAUCGCUCCAUUUGAGCUUAACACUCUGAAUUC .(((..((.((((((((((......)))))))))).))..........................((((.....)))).........))).... (-14.60 = -14.93 + 0.33)
| Location | 18,297,532 – 18,297,643 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 91.59 |
| Shannon entropy | 0.11582 |
| G+C content | 0.34234 |
| Mean single sequence MFE | -26.20 |
| Consensus MFE | -19.98 |
| Energy contribution | -21.10 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563644 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18297532 111 - 22422827 CAACUAUCGUUAUCUAUUUAUACCGCUAUACUCUGUCCUUCGUUGAAGUUUCUUGAUGUCAAAGCAAAUGUUUGGGAAUUCAGAGUGUUAAGCUCAUAAGGAGCGAUAUUA ....(((((((.....(((((...(((((((((((((((.((((...((((..((....)))))).))))...))))...))))))))..)))..))))).)))))))... ( -25.50, z-score = -1.49, R) >droSim1.chrX 14111529 111 - 17042790 CAACUAUCGUUAUCUAUUUAUACCGUCAUACUCUCUUCUUUGUUCAAGUUUCUUGAUAUCAAAGGAAAAGUUUGGGAAUUCAGAGUGUUAAGCUCAAAUGGAGCGAUAUAA ....((((((..(((((((...(((....(((...(((((((.(((((...)))))...)))))))..))).))).......((((.....)))))))))))))))))... ( -26.90, z-score = -2.62, R) >droSec1.super_8 606854 111 - 3762037 CAACUAUUGCUAUCUAUUUAUACCGUCAUACUCUCUUCUUUGUUCAAGUUUCUUGAUAUCAAAGGAAAAGUUUGGGAAUUCAGAGUGUUAAGCUCAAAUGGAGCGAUAUAA ....((((((..(((((((...(((....(((...(((((((.(((((...)))))...)))))))..))).))).......((((.....)))))))))))))))))... ( -26.20, z-score = -2.16, R) >consensus CAACUAUCGUUAUCUAUUUAUACCGUCAUACUCUCUUCUUUGUUCAAGUUUCUUGAUAUCAAAGGAAAAGUUUGGGAAUUCAGAGUGUUAAGCUCAAAUGGAGCGAUAUAA ....((((((..(((((((......(((.(((...(((((((.(((((...)))))...)))))))..))).))).......((((.....)))))))))))))))))... (-19.98 = -21.10 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:32 2011