| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,297,147 – 18,297,253 |
| Length | 106 |
| Max. P | 0.500000 |
| Location | 18,297,147 – 18,297,253 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.28 |
| Shannon entropy | 0.42985 |
| G+C content | 0.37822 |
| Mean single sequence MFE | -25.24 |
| Consensus MFE | -15.48 |
| Energy contribution | -13.72 |
| Covariance contribution | -1.76 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 18297147 106 - 22422827 CAUUACAUGCUGUUCUAAACCUCAUUGAAAACGUAUGUUCCAGAAUGAAUCAUUCAUUUCGGAUGUUUCUGGAAUGAGCAUUU--------------ACUUCUUUGUGCCAGUGCUUUGA ....((((((..(((...........)))...))))))(((((((.....(((((.....))))).)))))))..((((((((--------------((......)))..)))))))... ( -24.50, z-score = -1.49, R) >droSim1.chrX 14111120 99 - 17042790 -------CAUUAUGCUAAACCUCAUUGAAAACGUAUGUUCCAGAGUGAAUCACUCAGUUCGAAUGUUUCUGGAAUGAGCAUU--------------AGCUUUAUUGCGCCAGUGCGUUGA -------......(((((..((((((..((((((.((..(..(((((...))))).)..)).))))))....))))))..))--------------)))......((((....))))... ( -21.90, z-score = -0.38, R) >droSec1.super_8 606449 99 - 3762037 -------CAUUAUGCUAAACCUCAUUGAAAACGUAUGUUCCAGAGUGAAUCACUCAGUUCGGAUGUUUCUGGAAUGAGCAUU--------------AGCUUCAUUGCGCCAGUGCGUUGA -------......(((((..((((((................(((((...)))))...(((((....)))))))))))..))--------------))).(((.((((....)))).))) ( -24.00, z-score = -0.49, R) >droYak2.chrX 16924791 118 - 21770863 -ACU-UGUGCUGUUUUAAAGCUCAUUGGAAACGCAUGUUUCAGAAUGAAUCAUUCAGUUUGGUUGUUUCUGGAAUGAGCAUUUAAAUGCUUACACUAACUUCUUUGUGCCAGCACUUUGC -...-.((((((.((((((((((...(....)....(((((((((..(((((.......)))))..))))))))))))).))))))......(((..........))).))))))..... ( -32.20, z-score = -1.97, R) >droEre2.scaffold_4690 8616664 118 - 18748788 -AAU-UAUGCUGUUUAAAGCCUCAUUCAAAACGCAUGUUCUAGAAUGAAUCAUUCAUUUCGGAUGUUUCUGGAAUGAACAUUUACGUAUUUAUAUUUACUUCUUCGUACCAGUGCUUUGA -...-...(((......))).....(((((..((((......(((.(((...(((((((((((....))))))))))).......(((........)))))))))......))))))))) ( -23.60, z-score = -1.63, R) >consensus _A_U___UGCUGUUCUAAACCUCAUUGAAAACGUAUGUUCCAGAAUGAAUCAUUCAGUUCGGAUGUUUCUGGAAUGAGCAUUU_____________AACUUCUUUGUGCCAGUGCUUUGA .......(((((....................((.((((((((((.....((.((.....)).)).)))))))))).))..................((......))..)))))...... (-15.48 = -13.72 + -1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:30 2011