| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,294,925 – 18,295,027 |
| Length | 102 |
| Max. P | 0.782016 |
| Location | 18,294,925 – 18,295,027 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 66.80 |
| Shannon entropy | 0.62360 |
| G+C content | 0.33530 |
| Mean single sequence MFE | -24.98 |
| Consensus MFE | -8.27 |
| Energy contribution | -9.24 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.782016 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18294925 102 + 22422827 -----ACAUACAUACAAAUGUAUCUAUGUAUGUAUCUAUUAACGCUGAUAUAUUCGUUUGCUGGUGCAAAUAUGGGAGGAUUUUCCAAUUUGCAAAUGUGACAUUUG -----.........(((((((....(((.(((((((..........))))))).)))..((...(((((((.((((((...)))))))))))))...)).))))))) ( -23.30, z-score = -1.33, R) >droSim1.chrX 14108923 84 + 17042790 -----------------------AUGUAUCUAUGCAUUUCAAAGCUGAUAUAUUCGUGUGCUGGUGCAAAUAUGGGAGGAUUUUCCAAUUUGCAAAUGUGACAUUUG -----------------------(((((((...((........)).)))))))..((((((...(((((((.((((((...)))))))))))))...)).))))... ( -20.50, z-score = -1.15, R) >droSec1.super_8 604267 84 + 3762037 -----------------------AUGUAUCUAUGCAUUUCAAAGCUGAUAUAUUCGUGUGCUGGUGCAAAUAUGGGAGUAUUUUCCAAUUUGCAAAUGUGACAUUUU -----------------------(((((((...((........)).)))))))..((((((...(((((((.((((((...)))))))))))))...)).))))... ( -20.50, z-score = -1.43, R) >droYak2.chrX 16922543 104 + 21770863 ---GCAUCUAGAUACAUUUGUAUAUGUAUCUAUGCAUUUGUACGAUGAUAUAUUCGUGUGCUGGUGCAAAUAUGGGAGGAUUUUCCAAUUUGCAAAUGUGACAUUUG ---(((..(((((((((......)))))))))(((((..((((.((((.....))))))))..)))))....((((((...))))))...))).............. ( -29.00, z-score = -2.03, R) >droEre2.scaffold_4690 8614418 107 + 18748788 GCAUGAGAUGCAUAUACAUACAUAUGUAUCUCAGCAUUUGUACGCCGAUAUAUUCAUGGGCUUUUGCAAAUAUGGGAGGAUUUUCCAAUUUGCAAAUGUGACAUUUG ((.((((((((((((......))))))))))))))...((((((((.((......)).))).(((((((((.((((((...))))))))))))))).)).))).... ( -36.40, z-score = -4.29, R) >droMoj3.scaffold_6496 6589134 101 - 26866924 -----ACAUAUGUACAAAUACAUAUAUGUAUGCAUGUCUAAAUGCUCAUAUGUAUGUGUUCAACUAUGAAUUUAUUCUGGCUUUCGAAAUUG-AUCAAUGACUAUUG -----.((((.((...(((((((((((((..((((......))))..)))))))))))))..))))))........................-.............. ( -20.20, z-score = -1.19, R) >consensus _____A_AUA_AUACA_AU__AUAUGUAUCUAUGCAUUUCAACGCUGAUAUAUUCGUGUGCUGGUGCAAAUAUGGGAGGAUUUUCCAAUUUGCAAAUGUGACAUUUG .......................(((((((................)))))))......((...(((((((.(((((.....))))))))))))...))........ ( -8.27 = -9.24 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:30 2011