| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,290,290 – 18,290,385 |
| Length | 95 |
| Max. P | 0.716777 |
| Location | 18,290,290 – 18,290,385 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 72.83 |
| Shannon entropy | 0.46900 |
| G+C content | 0.55869 |
| Mean single sequence MFE | -37.45 |
| Consensus MFE | -20.99 |
| Energy contribution | -20.63 |
| Covariance contribution | -0.35 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.716777 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18290290 95 + 22422827 UGUGCUCAAGU-UCCAGUUA--GACUUACGCAUGAUGUGGCUGCU----GCAGUGGCCACCACAAGGCCGCCUUCGAAGUGGCUGCAGUUGCUCCGUCUCCU-------------- .((((..((((-(.......--)))))..))))((((..((.(((----(((..((((.......))))(((........))))))))).))..))))....-------------- ( -36.20, z-score = -1.55, R) >droSim1.chrX 14104325 95 + 17042790 UGUGCUCAAGU-UGCAGUAA--GACUUACGCAUGAUGUGGCUGCU----GCAGUGGCCACCACAAGGCCGCCUUCGAGGUGGCUGCAGUUGCUCCGUCUCCU-------------- .((((..((((-(.......--)))))..))))((((..((.(((----((.((((...))))..(((((((.....)))))))))))).))..))))....-------------- ( -40.50, z-score = -1.90, R) >droSec1.super_8 599648 95 + 3762037 UGUGCUCAAGU-UGCUGUAA--GACUUACGCAUGAUGUGGCUGCU----GCAGUGGCCACCACAAGGCCGCCUUCGAGGUGGCUGCAGUUGCUCCGUCUCCU-------------- .((((..((((-(.......--)))))..))))((((..((.(((----((.((((...))))..(((((((.....)))))))))))).))..))))....-------------- ( -40.50, z-score = -2.05, R) >droYak2.chrX 16917948 91 + 21770863 ----UGUAAGU-UGCAGUGA--GACUUACGCAUGAUGUGGCUGCU----GCAGUAGCCACCACAAGGCCGCCUUCGAUGUGCCUGCAGUUGCUCCGUCUCCU-------------- ----.((((((-(.......--)))))))....((((..((.(((----((((..(((.......))).(((......).))))))))).))..))))....-------------- ( -31.40, z-score = -0.92, R) >droEre2.scaffold_4690 8609967 96 + 18748788 UAUUCACAAGUCUGCAGUAA--GACUUACGCAUGAUGCGGCUGCU----GCAGUAGCCAGCACAAGGCCGCCUUCGAUGUGGCUGCAGUUGCUCCGUCUCCU-------------- .......((((((......)--)))))..(((...(((((((((.----...)))))).......((((((.......)))))))))..)))..........-------------- ( -32.40, z-score = -0.37, R) >droAna3.scaffold_13248 3940373 113 - 4840945 ---GUCUAGUAAUUACGUAACCAACUUACGCAUUCUGUGGCAGAUAGUGGCAGAUGUUGCUGCCACAAUGUUGCAGUUGCAAGUGCAGUUGCUGCCCCUGGGCAGUGGGAGCUCCU ---.............((..((((((((((((..(((..(((....(((((((......)))))))..)))..))).)))..))).))))((((((....))))))))..)).... ( -43.70, z-score = -1.69, R) >consensus UGUGCUCAAGU_UGCAGUAA__GACUUACGCAUGAUGUGGCUGCU____GCAGUGGCCACCACAAGGCCGCCUUCGAUGUGGCUGCAGUUGCUCCGUCUCCU______________ ................((((.....))))(((...((((((((((......))))))).......((((((.......)))))))))..)))........................ (-20.99 = -20.63 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:29 2011