| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,280,227 – 18,280,321 |
| Length | 94 |
| Max. P | 0.886485 |
| Location | 18,280,227 – 18,280,321 |
|---|---|
| Length | 94 |
| Sequences | 8 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 56.60 |
| Shannon entropy | 0.82398 |
| G+C content | 0.56143 |
| Mean single sequence MFE | -30.72 |
| Consensus MFE | -9.21 |
| Energy contribution | -9.40 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.886485 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18280227 94 + 22422827 --------CGCGACUCAUUGCCCAGCCACGCCCCCUCCCUCAA-AGGAGGAGGCACGGCCUGCAUUUUAA-GCAGUUCGU-----CAAUUC--UCUG--CUGGAUGUGGACAG- --------.((((....))))(((((...(((.(((((.....-.))))).)))(((..((((.......-))))..)))-----......--...)--))))..........- ( -34.50, z-score = -2.13, R) >droSim1.chrX 14098592 94 + 17042790 --------CGCGACUCAUUGCCCAGCCACGCCCCCUCCCUCGA-AGGAGG---CACGGCCUGCAUUUUAA-GCAGGUCGUCG--UCAAUUC--UCUG--CUGGAUCUGGACAG- --------.((((....))))(((((((.((..(((((.....-.)))))---.(((((((((.......-)))))))))..--.......--...)--))))..))))....- ( -33.50, z-score = -1.73, R) >droSec1.super_8 589775 93 + 3762037 --------CGCGACUCAUUGCCCAGCCACGCCCCUUCC-UCGA-AGGAGG---CACGGCCUGCAUUUUAA-GCAGGUCGUCG--UCAAUUC--UCUG--CUGGAUCUGGACAG- --------.((((....))))(((((...((((((((.-..))-))).))---)(((((((((.......-)))))))))..--.......--...)--))))..........- ( -36.40, z-score = -2.80, R) >droYak2.chrX 16908386 93 + 21770863 --------CACGACUCAUUGCCCAGCCACGCCCCCUCGCCCAC-AGGAGG---CACGGCCUGCAUUUUAA-GCAGGUCGA-----CAAUUC--UCUGUGCUGGAGCUGGACAA- --------......((...(((((((.(((((.(((.......-))).))---).((((((((.......-)))))))).-----......--...))))))).))..))...- ( -35.90, z-score = -2.56, R) >droEre2.scaffold_4690 8601065 83 + 18748788 -----------------CCGCCCAGCCACGCCCCUCCCUCCACCAGGAGG---CACGGCGUGCAUUUUAA-GCAGGUCGA-----CAAUUC--UCUG--GCGGCUCUGGACGA- -----------------.((.((((...((((....(((((....)))))---..((((.(((.......-))).)))).-----......--...)--)))...)))).)).- ( -33.10, z-score = -1.94, R) >droAna3.scaffold_13248 3928065 88 - 4840945 --------AGCCACUUGUUAUUCAACCACGCCCCUUGCAUUUUAAACAGA----UCAGUUUGGAUUCGGUUGCCAAGUGCCUGGGGGGAUCCCCUUGCAG-------------- --------.((((((((.....(((((..((.....))..(((((((...----...)))))))...))))).))))))...(((((....)))))))..-------------- ( -24.20, z-score = -0.30, R) >dp4.chrXL_group3a 246646 108 + 2690836 ACCAACCAACCAAGCUACUACCUCUCGCCGAUUCCCCUUUAAU--UGAGG---CACGGCCUGCAUUUUAA-GCAGACCGCAAAUUUAAGUUGCUUUUCACAUGAGUUGAGGGGA ....................((((((((((.....((((....--.))))---..))))((((.......-))))...((((.......))))..............)))))). ( -25.00, z-score = -0.72, R) >droPer1.super_39 258063 108 - 745454 ACCAACCAACCAAGCUACUACCUCCCGCCGAUUCCCCUUUAAU--UGAGG---CACGGCCUGCAUUUUAA-GCAGACCGCAAAUUUAAGUUGAUUUUCACAUGAGUUGAGGGGA ......................((((..((((((.((((....--.))))---..(((.((((.......-)))).))).......................)))))).)))). ( -23.20, z-score = -0.54, R) >consensus ________CGCGACUCAUUGCCCAGCCACGCCCCCUCCCUCAA_AGGAGG___CACGGCCUGCAUUUUAA_GCAGGUCGC____UCAAUUC__UCUG__CUGGAUCUGGACAG_ .......................................................((((((((........))))))))................................... ( -9.21 = -9.40 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:26 2011