| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,273,873 – 18,273,975 |
| Length | 102 |
| Max. P | 0.802385 |
| Location | 18,273,873 – 18,273,975 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 50.87 |
| Shannon entropy | 0.89116 |
| G+C content | 0.40146 |
| Mean single sequence MFE | -28.26 |
| Consensus MFE | -6.04 |
| Energy contribution | -7.48 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.21 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.802385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18273873 102 - 22422827 -----UUUGAUU--UUUAAAACUGUUUAAGCUACUGGUA-UUUUCAGCUUAGCUA-UAAACUAGCUAUGAGUUCGAAGCCACCGAUGUGGUAUUUUCGGUAUAUUGCGCGG -----.......--.......((((.(((..((((((..-..(((((((((((((-.....)))))..))))).)))(((((....)))))....))))))..))).)))) ( -22.90, z-score = -0.63, R) >droYak2.chrX 16901976 109 - 21770863 UGCGAUUUAAUUCGUUGAAAACUGCUU-GGUGACUGGUAUUUUUUAGCUUAGCUA-UAAACUAGCUGAAUAUUCGAAGCAAUCGAUGUGGUAUAUUCAGUAUAUUGCGCGG .((((((...(((((((((((.((((.-(....).)))).))))))))(((((((-.....)))))))......)))..))))...(..((((((...))))))..))).. ( -31.40, z-score = -2.73, R) >droEre2.scaffold_4690 8594637 108 - 18748788 UAUGAUUAAAUUAAGUGAAUACUGUGU-GGUGGCUGGUA-UUUUCAGCUUGGCUA-UAAACUAGCUGAAAAUACGAAGCCACUGAUGUGGUAUAUUCGGUAUAUUGCGCGG .....................(((((.-.((((((((((-(((((((((.(....-....).))))))))))))...(((((....))))).....)))).)))..))))) ( -37.50, z-score = -4.80, R) >droWil1.scaffold_180702 2993702 106 + 4511350 UUUUAUAGUAUAUAUAUGUAAUCAUAUAUCUUGCUUAGAUAUGUUUAGUCACCUAUUAGAAAGGGCAUAUAAACAUCGACUUGGUCGAGCUAAGUCCGGUUCAUUG----- .((((.((((.(((((((....)))))))..)))))))).(((((((....(((.......))).....))))))).(((((((.....)))))))..........----- ( -22.60, z-score = -1.33, R) >anoGam1.chr2R 44553673 86 - 62725911 --------------UUCCAUUUUGCA--GGUCGCCUGCGAGUGUUUGAUC-GCUG-CUGCCUCGAAGAAGG-ACAAAGCGAAGGGUUUGGUGCAAUCGG------GAGCGG --------------((((...(((((--(((.((..((((........))-)).)-).)))..........-.((((.(....).)))).)))))...)------)))... ( -26.90, z-score = 0.36, R) >consensus U___AUUUAAUU__UUGAAAACUGUAU_GGUGGCUGGUA_UUUUUAGCUUAGCUA_UAAACUAGCUGAAAAUACGAAGCCACCGAUGUGGUAUAUUCGGUAUAUUGCGCGG .....................((((.......(((((...........(((((((......))))))).........(((((....)))))....))))).......)))) ( -6.04 = -7.48 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:26 2011