| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,264,535 – 18,264,625 |
| Length | 90 |
| Max. P | 0.667494 |
| Location | 18,264,535 – 18,264,625 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 69.80 |
| Shannon entropy | 0.54553 |
| G+C content | 0.30423 |
| Mean single sequence MFE | -19.23 |
| Consensus MFE | -8.12 |
| Energy contribution | -8.48 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.667494 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18264535 90 + 22422827 UUUGCGAUUGCUAAUUGUUAGUUUUUAGUGCUA----CUGAACACCUCUUUUUGUUGAAUUAAUAGAAUAACAAUACAAUUAGUGAUUCAUUAA ..((.(((..((((((((..((.(((((.....----))))).))....((((((((...)))))))).......))))))))..))))).... ( -16.50, z-score = -1.53, R) >droSim1.chrX 14082720 94 + 17042790 UUUGCGAUUGCUAAUUGUUUGUUUUUCGUGCUAGUUGUUGAACACCUCUUAGUGUUGAAUUAAUGGAAUAACAAUAUAAUUAGUGAUUCAUUAA ..((.(((..(((((((((((((((((((.......(((.(((((......))))).)))..)))))).))))).))))))))..))))).... ( -23.10, z-score = -3.22, R) >droSec1.super_8 574090 94 + 3762037 UUUGCGAUUGCUAAUUGUUUGUUUUUCGUGCUAGUUGUUGAACACCUCUUAGUGUUGAAUUAAUGGAAUAACAAUAUAAUUAGUGAUUCAUUAA ..((.(((..(((((((((((((((((((.......(((.(((((......))))).)))..)))))).))))).))))))))..))))).... ( -23.10, z-score = -3.22, R) >droEre2.scaffold_4690 8585280 91 + 18748788 UUUGCUAUUGCUAAUUGUUUUUUUUCGGUGCCAG---CUGAACACCUCUCAGUGUUGAAUUAAUAGAAUAACACUUUAAUAAGUGAUUCAUUAA ....((((((..............(((((....)---))))((((......)))).....)))))).....(((((....)))))......... ( -13.50, z-score = 0.06, R) >dp4.chrXL_group1e 331685 94 + 12523060 UUUGUGUUUGUUGGUUGGUAAACCAUAUGGCCAUAUGACAUUAGAAUUUGCUUACUGUCUAGCUGCGAAAACAGUCCUAUGGAAAAAGCAUACA ..(((((((..(((((....))))).....(((((.(((..........(((........)))..........))).)))))...))))))).. ( -19.95, z-score = -0.11, R) >consensus UUUGCGAUUGCUAAUUGUUUGUUUUUAGUGCUAG_UGCUGAACACCUCUUAGUGUUGAAUUAAUGGAAUAACAAUAUAAUUAGUGAUUCAUUAA .....(((((((((((((............(((.......(((((......))))).......))).........)))))))))))))...... ( -8.12 = -8.48 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:22 2011