| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,249,474 – 18,249,579 |
| Length | 105 |
| Max. P | 0.581453 |
| Location | 18,249,474 – 18,249,579 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.57 |
| Shannon entropy | 0.33015 |
| G+C content | 0.48048 |
| Mean single sequence MFE | -28.02 |
| Consensus MFE | -17.54 |
| Energy contribution | -17.66 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.581453 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18249474 105 + 22422827 GGUCGCUGGGGGCUUAUAUUCUUUUCAAUUAACAGCCCCAUUGGAUGGAUGC-GAUGCAUCCCAGGAAUCAUCGGUCGUAAAAAUUGACAAAUUCCCCCACACACG-------------- ...((.((((((((...(((......)))....))))))..(((..((((((-...))))))..(((((.....((((.......))))..))))).)))..))))-------------- ( -27.00, z-score = -0.37, R) >droSim1.chrX 14069092 113 + 17042790 GGUCGCUGGGGGCUUAUAUUCUUUUCAAUUAACAGCCCCAUUGGUUGGAUGC-GAUGCAUCC----AGCCAUCGCUCGUAAAAAUUGACAAAUUCCCCCACACACACACACACACACG-- .((.(.((((((.....(((....((((((.(((((.....(((((((((((-...))))))----)))))..))).))...))))))..))).)))))))))...............-- ( -32.30, z-score = -3.14, R) >droSec1.super_8 561273 115 + 3762037 GGUCGCUGGGGGCUUAUAUUCUUUUCAAUUAACAGCCCCAUUGGUUGGAUGC-GAUGCAUCC----AGCCAUCGCUCGUAAAAAUUGACAAAUUCCCCCACACACUCACACACACACACG .((.(.((((((.....(((....((((((.(((((.....(((((((((((-...))))))----)))))..))).))...))))))..))).)))))))))................. ( -32.30, z-score = -3.23, R) >droYak2.chrX 16879793 95 + 21770863 GGUCGCUGGGGGCUUAAAUUCUUUUCAAUUAACAGCCCA------UGGAUGC-GAUGCAGGC----UGCCAUCGGUUGUUAAAAUUGACAAAUUCCCUUACACACG-------------- .((.(.((((((....((((....(((((((((((((.(------(((..((-.......))----..)))).))))))))..)))))..)))))))))))))...-------------- ( -23.90, z-score = -0.63, R) >droEre2.scaffold_4690 8571917 94 + 18748788 GGUCGCUGGGGGCUUAUAUUCUUUUCAGUUAACAGCCCA------UGAAUGCCGAUGCAUCC----AGCCAUCGGUCAUAAAAAAUGACAAAUUCCCCCGCACG---------------- (((.((((((((((......((....)).....))))).------...((((....))))))----))).))).(((((.....)))))...............---------------- ( -24.60, z-score = -1.15, R) >consensus GGUCGCUGGGGGCUUAUAUUCUUUUCAAUUAACAGCCCCAUUGG_UGGAUGC_GAUGCAUCC____AGCCAUCGGUCGUAAAAAUUGACAAAUUCCCCCACACACG______________ (..((.((((((((...(((......)))....)))))........((((((....))))))......))).))..)........................................... (-17.54 = -17.66 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:21 2011