| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,247,094 – 18,247,184 |
| Length | 90 |
| Max. P | 0.951112 |
| Location | 18,247,094 – 18,247,184 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 77.46 |
| Shannon entropy | 0.37071 |
| G+C content | 0.42015 |
| Mean single sequence MFE | -17.85 |
| Consensus MFE | -10.24 |
| Energy contribution | -10.44 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.873563 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18247094 90 + 22422827 -CCAUUUUCAAGCCGAUUCCCCGACUAUAUUCGUAUGUAUACGUAUGUAUAUAUCCCCUUUUUUUAUGCCAAAGUCUUGGGACUUGAGCCC -..........(((((.((((.((((......(((((....)))))(((((.............)))))...))))..)))).))).)).. ( -17.62, z-score = -2.17, R) >droSim1.chrX 14066752 81 + 17042790 CCAAUUUUGAAGCCGAUUUCCCGGCUAUAU----------ACGUGUGUAUAUAUCCCCUUUUUUUAUGCCCAAGUCUUGGGACUUGAGCCC ..........(((((......)))))((((----------((....))))))...............((.((((((....)))))).)).. ( -20.50, z-score = -2.93, R) >droSec1.super_8 558915 81 + 3762037 CCAAUUUUCAAGCCGAUUUCCCGGCUAUAU----------ACGUGUGUAUAUAUCCCCUUUUUUUAUGCCCAAGUCUUGGGACUUGAGCCC ..........(((((......)))))((((----------((....))))))...............((.((((((....)))))).)).. ( -20.50, z-score = -3.14, R) >droYak2.chrX 16877479 80 + 21770863 -UCUUUUUCAAGCCAAUUCCUUGGCUAUUU----------ACGUAUAUAGCCCCCCUUUUUUUUUAUGCCAAAGUCUUGGGACUUGAGCCC -.....((((((..........((((((..----------......)))))).(((....((((......))))....))).))))))... ( -15.30, z-score = -1.34, R) >droEre2.scaffold_4690 8569754 85 + 18748788 -UCUUUUUCCAGACGAUUCUUUGGCUAUAU----ACGUAUAUGUACGAGUAUAUCCCCUUUUUU-AUGCCAAUGUCUUAGGACUUGAGCCC -.(((..((((((((.....((((((((((----.((((....)))).)))))...........-..))))))))))..)))...)))... ( -15.31, z-score = -1.13, R) >consensus _CCAUUUUCAAGCCGAUUCCCCGGCUAUAU__________ACGUAUGUAUAUAUCCCCUUUUUUUAUGCCAAAGUCUUGGGACUUGAGCCC ..........(((((......))))).........................................((..(((((....)))))..)).. (-10.24 = -10.44 + 0.20)
| Location | 18,247,094 – 18,247,184 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 77.46 |
| Shannon entropy | 0.37071 |
| G+C content | 0.42015 |
| Mean single sequence MFE | -20.94 |
| Consensus MFE | -12.90 |
| Energy contribution | -12.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.951112 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18247094 90 - 22422827 GGGCUCAAGUCCCAAGACUUUGGCAUAAAAAAAGGGGAUAUAUACAUACGUAUACAUACGAAUAUAGUCGGGGAAUCGGCUUGAAAAUGG- ..(((.(((((....))))).)))....................(((.((((....)))).....((((((....)))))).....))).- ( -16.70, z-score = -0.62, R) >droSim1.chrX 14066752 81 - 17042790 GGGCUCAAGUCCCAAGACUUGGGCAUAAAAAAAGGGGAUAUAUACACACGU----------AUAUAGCCGGGAAAUCGGCUUCAAAAUUGG ..(((((((((....)))))))))...........((((((((((....))----------)))))(((((....))))))))........ ( -26.00, z-score = -4.24, R) >droSec1.super_8 558915 81 - 3762037 GGGCUCAAGUCCCAAGACUUGGGCAUAAAAAAAGGGGAUAUAUACACACGU----------AUAUAGCCGGGAAAUCGGCUUGAAAAUUGG ..(((((((((....)))))))))..............(((((((....))----------)))))(((((....)))))........... ( -25.90, z-score = -4.01, R) >droYak2.chrX 16877479 80 - 21770863 GGGCUCAAGUCCCAAGACUUUGGCAUAAAAAAAAAGGGGGGCUAUAUACGU----------AAAUAGCCAAGGAAUUGGCUUGAAAAAGA- ....(((((((((....((((...........)))).))))))........----------....((((((....)))))))))......- ( -18.70, z-score = -1.03, R) >droEre2.scaffold_4690 8569754 85 - 18748788 GGGCUCAAGUCCUAAGACAUUGGCAU-AAAAAAGGGGAUAUACUCGUACAUAUACGU----AUAUAGCCAAAGAAUCGUCUGGAAAAAGA- ((((....))))..((((.(((((..-......(((......)))((((......))----))...)))))......)))).........- ( -17.40, z-score = -1.43, R) >consensus GGGCUCAAGUCCCAAGACUUUGGCAUAAAAAAAGGGGAUAUAUACAUACGU__________AUAUAGCCGGGGAAUCGGCUUGAAAAUGG_ ..(((.(((((....))))).))).........................................((((((....)))))).......... (-12.90 = -12.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:20 2011