| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,245,181 – 18,245,273 |
| Length | 92 |
| Max. P | 0.568636 |
| Location | 18,245,181 – 18,245,273 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 67.65 |
| Shannon entropy | 0.56521 |
| G+C content | 0.44709 |
| Mean single sequence MFE | -26.28 |
| Consensus MFE | -12.40 |
| Energy contribution | -11.84 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.568636 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18245181 92 + 22422827 CAUAAUAGCAAUGCCAAAUGGUACGAAACGUGCCCAAGCAGUUGCUAAUAGCUAGUGCUUCGAUUAGUAUCUUCCACGGAAAUGUGCUGAAA------------------------ .....(((((((((.....((((((...))))))...))).))))))..(((....)))....(((((((.(((....)))..)))))))..------------------------ ( -24.10, z-score = -1.66, R) >droEre2.scaffold_4690 8567909 91 + 18748788 -AUAAAGGCAACGCCAAAUGGUACGAAACGUGCUCAAGCAGUUGCUAAUGG---GCGCUCCUUUUAGUCUCUGCCCCCGAAGU-UAUAGAAAUGUG-------------------- -.....(((...)))...(((((((...))))).)).((((..(((((.((---(....))).)))))..)))).........-((((....))))-------------------- ( -21.30, z-score = -0.13, R) >droYak2.chrX 16875688 110 + 21770863 CUGAAUGACAAUGCCAAAUGGUGCGAAACGUGCUCCAGCAGUUGCUAAUGG---GCGCUGCGAUUAGUCCGUUUCGCGGGAAAAUAUUACUAAGUAAAAGUUAUAGAAAUGUG--- ....(((((...(((....)))((((((((..((...(((((.(((....)---)))))))....))..))))))))......................))))).........--- ( -32.00, z-score = -2.04, R) >droSec1.super_8 556995 113 + 3762037 CAUAAUAGCAAUGCCAAAUGGUACGAAACGUGUCCAAGCAGUUGCUAAUGG---GUGCUCCGAUUAGACUCUUCCACGGAAAAACAUUGCUCCAUGCUCACCCGAAGCUAUAGAAA .....(((((((((....(((((((...)))).))).))).)))))).(((---(((.((((..............))))........((.....)).))))))............ ( -25.74, z-score = -0.63, R) >droSim1.chrX 14064849 113 + 17042790 CAUAAUAGCAAUGCCAAAUGGUACGAAACGUGCCCAAGCAGUUGCUAAUGG---GUGCUCCGAUUAGUCUCUUCCACGGAAAAACAUAGCUCCAUGCUCACUCGAAGCUAUAGAAA ....(((((..((((....))))(((...(..(((((((....)))..)))---)..)((((..............)))).......(((.....)))...)))..)))))..... ( -28.24, z-score = -1.28, R) >consensus CAUAAUAGCAAUGCCAAAUGGUACGAAACGUGCCCAAGCAGUUGCUAAUGG___GUGCUCCGAUUAGUCUCUUCCACGGAAAAAUAUUGCUACAUG________A_______G___ .....(((((((((.....((((((...))))))...)).)))))))..................................................................... (-12.40 = -11.84 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:18 2011