| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,234,018 – 18,234,109 |
| Length | 91 |
| Max. P | 0.577049 |
| Location | 18,234,018 – 18,234,109 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 81.52 |
| Shannon entropy | 0.30932 |
| G+C content | 0.46692 |
| Mean single sequence MFE | -20.50 |
| Consensus MFE | -14.61 |
| Energy contribution | -15.37 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.577049 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18234018 91 + 22422827 ACUGAACUGAAGUGAACUGGCACUGGCCCCAAGUGGACAUAAAUUCCACUUGAAC--UCAUUCCUCGUCUCGCUUGCUUU--CAUUAGCUUGGAG .(..(....((((((((.(((....))).((((((((.......))))))))...--.........)).))))))(((..--....))))..).. ( -23.20, z-score = -1.51, R) >droPer1.super_39 209325 79 - 745454 ACUGUGCUAAAGCGGAC---------CCCAAAGUGGACAUAAAUUCCACUUGAACCCUCAUUCCCCCAGUCAGUUGCUUUUUCAUUAG------- ...(((..(((((.(((---------....(((((((.......)))))))((....)).........)))....)))))..)))...------- ( -15.10, z-score = -1.48, R) >dp4.chrXL_group3a 200454 79 + 2690836 ACUGUGCUAAAGCGGAC---------CCCAAAGUGGACAUAAAUUCCACUUGAACCCUCAUUCCCCCAGUCAGUUGCUUUUUCAUUAG------- ...(((..(((((.(((---------....(((((((.......)))))))((....)).........)))....)))))..)))...------- ( -15.10, z-score = -1.48, R) >droSim1.chrX 14054536 91 + 17042790 ACUGAACUGAAGUGAACUGGCACUGGCCCCAAGUGGACAUAAAUUCCACUUGAAC--UCAUUCCUCGUCUCGCUUGCUUU--CAUUAGCUUGGAG .(..(....((((((((.(((....))).((((((((.......))))))))...--.........)).))))))(((..--....))))..).. ( -23.20, z-score = -1.51, R) >droSec1.super_8 546256 91 + 3762037 ACUGAACUGAAGUGAACUGGCACUGGCCCCAAGUGGACAUAAAUUCCACUUGAAC--UCAUUCCUCGUCUCGCUUGCUUU--CAUUAGCUUGGAG .(..(....((((((((.(((....))).((((((((.......))))))))...--.........)).))))))(((..--....))))..).. ( -23.20, z-score = -1.51, R) >droYak2.chrX 16867624 91 + 21770863 ACUGAACUGAAGUGAACUGGCACUGGCCCCAAGUGGACAUAAAUUCCACUUGAAC--UCAUUCCUCGUCUCGCUUGCUUU--CAUUAGCUUGGAG .(..(....((((((((.(((....))).((((((((.......))))))))...--.........)).))))))(((..--....))))..).. ( -23.20, z-score = -1.51, R) >consensus ACUGAACUGAAGUGAACUGGCACUGGCCCCAAGUGGACAUAAAUUCCACUUGAAC__UCAUUCCUCGUCUCGCUUGCUUU__CAUUAGCUUGGAG .((((...(((((((...(((....))).((((((((.......)))))))).....................)))))))....))))....... (-14.61 = -15.37 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:16 2011