Locus 15276

Sequence ID dm3.chrX
Location 18,231,434 – 18,231,531
Length 97
Max. P 0.952264
window21043

overview

Window 3

Location 18,231,434 – 18,231,531
Length 97
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 59.34
Shannon entropy 0.59849
G+C content 0.34823
Mean single sequence MFE -20.28
Consensus MFE -13.38
Energy contribution -13.50
Covariance contribution 0.12
Combinations/Pair 1.33
Mean z-score -1.01
Structure conservation index 0.66
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.58
SVM RNA-class probability 0.952264
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 18231434 97 - 22422827
-----------------------GAUGACUGCUUCUUAGUUUGAAUAUCGCUGACUUUAUCACUAUAGUUAUGGAUCUCGUGGUGAAAAAGUUACUAAGCAAGAGCUCUAUCGAUAUACC
-----------------------((((...((((((((((............((((((.(((((((((........)).))))))).))))))))))))...))))..))))........ ( -21.60, z-score =  -1.09, R)
>droYak2.chrX 16864980 120 - 21770863
GAUAAUGAUUGGCUGCCUCUAAUACUAUAGAUUAUAGAUUAUUAUUAUUAUAGAUUAUUAUACUAGUAUUAUAGAUCUGCUGCUUGCAGAGUUCCUAAGCAAGAGCUCUAUGGAUGGUAC
(((((((((...(((..((((......))))...)))...)))))))))...........(((((...((((((((((((.....)))))((((........))))))))))).))))). ( -25.70, z-score =   0.15, R)
>droSec1.super_8 542697 78 - 3762037
------------------------------------------GAAUAUCACUUACUUUAUCACUAUGGUUAUGGAUCUCGUGGUGAAAAAGUUGCUAAGCAAGAGCUCUAUAGAUAUCAC
------------------------------------------((.((((....(((((.(((((((((.........))))))))).))))).(((.......)))......)))))).. ( -17.10, z-score =  -1.50, R)
>droSim1.chrX 14052075 78 - 17042790
------------------------------------------AAAUAUCACUUACUUUAUCACUAUGGUUAUGGAUCUCGUGGUGAAAAAGUUGCUAAGCAAGAGCUCUAUAGAUAUCAC
------------------------------------------..(((((....(((((.(((((((((.........))))))))).))))).(((.......)))......)))))... ( -16.70, z-score =  -1.58, R)
>consensus
__________________________________________GAAUAUCACUGACUUUAUCACUAUGGUUAUGGAUCUCGUGGUGAAAAAGUUGCUAAGCAAGAGCUCUAUAGAUAUCAC
............................................(((((..(((((((.(((((((((.........))))))))).)))))))...(((....))).....)))))... (-13.38 = -13.50 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:14 2011