| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,225,690 – 18,225,810 |
| Length | 120 |
| Max. P | 0.572274 |
| Location | 18,225,690 – 18,225,810 |
|---|---|
| Length | 120 |
| Sequences | 8 |
| Columns | 127 |
| Reading direction | forward |
| Mean pairwise identity | 86.06 |
| Shannon entropy | 0.28077 |
| G+C content | 0.47332 |
| Mean single sequence MFE | -33.21 |
| Consensus MFE | -24.97 |
| Energy contribution | -25.49 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.572274 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18225690 120 + 22422827 -------CCAAAGUCCCGAGUCGCAAGUCGCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGCGGCUUUGUGUGGAAGCUAAUUAGCCUGUCUAUGCCACUGACAGGACUCUCGCG -------..........(((((((.....(((((((.....))))))).(((((((......(((((((((....)))))).)))...))))))).))(((((.........))))))))))..... ( -35.70, z-score = -1.78, R) >droWil1.scaffold_180702 1460547 99 + 4511350 -----------------------CAAGUCGCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGCGGCUUUGUGUUAGAGUUAAUUAGCCCGUCUAUGCCACUGACAGGACGC----- -----------------------...((((((((((.....)))))))....(((((.(((((((.(((((....)))))))))).))(((....))).......)))))..))).......----- ( -23.90, z-score = -0.46, R) >droSim1.chrX 14046773 120 + 17042790 -------CCAAAGUCCCGAGUCGCAAGUCGCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGCGGCUUUGUGUGGUAGCUAAUUAGCCUGUCUAUGCCACUGACAGGACUCUCGCG -------..........(((((((.....(((((((.....))))))).(((((((.((((.(((.(((((....)))))))))))).))))))).))(((((.........))))))))))..... ( -37.50, z-score = -2.41, R) >droSec1.super_8 537306 120 + 3762037 -------CCAAAGUCCCCAGUCGCAAGUCGCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGCGGCUUUGUGUGGUAGCUAAUUAGCCUGUCUAUGCCACUGACAGAACUCUCGCG -------..........((((.(((((.((((((((.....))))))).(((((((.((((.(((.(((((....)))))))))))).))))))).....).)).))).)))).............. ( -31.20, z-score = -1.22, R) >droYak2.chrX 16859513 122 + 21770863 CCAAAGUCCGAACUCCCGAGUCGCAAGUCGCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGCGGCUUUGUGUGGGAGCUAAUUAGCCUGUCUAUGCCACUGACAGGACCC----- ............((((((((((((((...(((((((.....)))))))...((((.........))))..))))))))).....)))))........((((((.........))))))....----- ( -36.00, z-score = -1.73, R) >droEre2.scaffold_4690 8550020 122 + 18748788 CCACAGUUCCGAGUCGCAAGUCGCAAGUCGCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGCGGCUUUGUGUGGGAGCUAAUUAGCCUGUCUAUGCCACUGACAGGACCU----- ....((((((.(..((((((((((((...(((((((.....)))))))...((((.........))))..))))))).)))))).))))))......((((((.........))))))....----- ( -39.40, z-score = -2.15, R) >dp4.chrXL_group3a 189983 120 + 2690836 -------CCAAAGUCCCGAGCCGCAAGUCGCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGUGGCUUUGUGUUGGAGUUAAUUAGCCUUUCUAUUCCACUGACAGGACAGCCACG -------.....((((.(((((((((...(((((((.....)))))))...((((.........))))..)))))))))(((..((((((..(........)..))))))...)))))))....... ( -31.30, z-score = -1.32, R) >droPer1.super_39 200850 120 - 745454 -------CCAAAGUCCCGAGCCGCAAGUCGCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGUGGCUUUGUGUUGGAGUUAAUUAGCCUUUCUAUGCCACUGACAGGACAGCCACG -------.....((((.(.....)..((((((((((.....)))))))....(((((.(((((((.(((((....)))))))))))).(((....))).......)))))..))).))))....... ( -30.70, z-score = -0.64, R) >consensus _______CCAAAGUCCCGAGUCGCAAGUCGCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGCGGCUUUGUGUGGGAGCUAAUUAGCCUGUCUAUGCCACUGACAGGACUC_C_CG ...................(.(....).)(((((((.....))))))).(((((((.....((((.(((((....)))))))))....)))))))..((((((.........))))))......... (-24.97 = -25.49 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:13 2011