| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,224,284 – 18,224,384 |
| Length | 100 |
| Max. P | 0.937096 |
| Location | 18,224,284 – 18,224,384 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 88.90 |
| Shannon entropy | 0.19797 |
| G+C content | 0.54016 |
| Mean single sequence MFE | -38.90 |
| Consensus MFE | -29.74 |
| Energy contribution | -31.98 |
| Covariance contribution | 2.24 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.937096 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18224284 100 + 22422827 UGCACUUUGUGCGGCUAUCUGGUUGCCACCAAUGAAUCCUGGCAAUUGGUGCAACAUCAGGUGCGAAAUGUCUGUUCUGCGAUAGCCCACGAGGUGUCCG .((((((((((.(((((((..(((((.((((((...........))))))))))).......(((.(((....))).))))))))))))))))))))... ( -41.50, z-score = -3.46, R) >droEre2.scaffold_4690 8548696 98 + 18748788 --CACUUUGUACGGCUUUCUGGCUGCCACCAAUGAAUCCUGGCAAUUGCUGCAGCACCAGGUGUAAAAUGCCUGUCCUGCGAUAGGCCACAAGGUGUCCG --((((((((..(((((((.((((((((...........)))))...)))((((...(((((((...)))))))..)))))).))))))))))))).... ( -33.90, z-score = -1.45, R) >droYak2.chrX 16858048 100 + 21770863 UGCACUUUGCAGUGCUAUCUGCUUGCCACAAAUGAAUCCUGGCAAUUGGUGCAACAGCAGGUGCAAAACGCCUGCUCUGCGAUAGGCCACCAGGUGUCCG ((((((..((((......))))((((((...........))))))..))))))..((((((((.....))))))))........((.(((...))).)). ( -33.60, z-score = -0.45, R) >droSec1.super_8 535896 100 + 3762037 UGCACUUUGUGGCGCUAUCUGGUUGCCACCAACGAAUCCUGGCAAUUGGUGCAACAUCAGGUGCGAAAUGCCUGUUCUGCGAUAGCCCACGAGGUGUCCG .(((((((((((.((((((.((((((((...........))))))))...(((....(((((.......)))))...))))))))))))))))))))... ( -43.30, z-score = -3.74, R) >droSim1.chrX 14045354 100 + 17042790 UGCACUUUGUGGGGCUAUCUGGUUGCAACCAACGAAUCCUGGCAAUUGGUGCAACAUCAGGUGCGAAAUGCCUGUUCUGCGAUAGCCCACGAGGUGUCCG .((((((((((((.(((((..((((((.((((.............))))))))))..(((((.......)))))......)))))))))))))))))... ( -42.22, z-score = -3.28, R) >consensus UGCACUUUGUGGGGCUAUCUGGUUGCCACCAAUGAAUCCUGGCAAUUGGUGCAACAUCAGGUGCGAAAUGCCUGUUCUGCGAUAGCCCACGAGGUGUCCG .(((((((((((.((((((..(((((.((((((...........)))))))))))..((((((.....))))))......)))))))))))))))))... (-29.74 = -31.98 + 2.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:12 2011