| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,216,101 – 18,216,218 |
| Length | 117 |
| Max. P | 0.584566 |
| Location | 18,216,101 – 18,216,218 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 130 |
| Reading direction | forward |
| Mean pairwise identity | 69.23 |
| Shannon entropy | 0.41928 |
| G+C content | 0.43236 |
| Mean single sequence MFE | -33.70 |
| Consensus MFE | -13.65 |
| Energy contribution | -15.88 |
| Covariance contribution | 2.23 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.584566 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18216101 117 + 22422827 CGAUGUGGCAGCCUUACAUAAGGCAUGCCGAAUCGUCAUGGACAUGGAUUUACAUUU-------------GUCUUUAACUUGCCAUGGCAAAGAUUCCUUAGCCAGGGAACUUUAUUAAACCAAAUUGAA .(((.((((((((((....))))).))))).)))(((((((.((.((((........-------------))))......)))))))))((((.((((((....))))))))))................ ( -36.40, z-score = -3.28, R) >droSim1.chrX 14037067 111 + 17042790 CGAUGUGGCAGCCUUGCAAAAGGCAUGCCGAAUCGCCAUGGACAGGGACUUACAUUU-------------GUCCUUAACUUGCCA-----AAGAUUCCUUAGCCAGG-AACUUUACUAAAUCAAAUUGAA ((((.((((((((((....))))).))))).))))...(((..((((((........-------------))))))........(-----(((.(((((.....)))-)))))).)))............ ( -32.80, z-score = -2.43, R) >droYak2.chrX 16850305 119 + 21770863 AGAAGUGGCACCCUUGCAACAGGCAUGUGGCAUCGUCAGGGACAGCGAGUUACGUUUAAUACAAAGUUUUGCCUUUGACUUGCCACAGCAAUGAUUUCGUAGCCAGGAACUUUUUAUAA----------- ((((((.....(((.((.....((.(((((((..(((((((...(((((....((.....)).....)))))))))))).))))))))).(((....))).)).))).)))))).....----------- ( -31.90, z-score = -0.81, R) >consensus CGAUGUGGCAGCCUUGCAAAAGGCAUGCCGAAUCGUCAUGGACAGGGACUUACAUUU_____________GUCUUUAACUUGCCA__GCAAAGAUUCCUUAGCCAGG_AACUUUAAUAAA_CAAAUUGAA .(((.((((((((((....))))).))))).))).....((.((((................................)))))).....((((.((((.......)))).))))................ (-13.65 = -15.88 + 2.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:12 2011