Locus 15271

Sequence ID dm3.chrX
Location 18,207,586 – 18,207,658
Length 72
Max. P 0.985371
window21037

overview

Window 7

Location 18,207,586 – 18,207,658
Length 72
Sequences 3
Columns 76
Reading direction forward
Mean pairwise identity 85.71
Shannon entropy 0.19333
G+C content 0.51779
Mean single sequence MFE -26.03
Consensus MFE -21.57
Energy contribution -21.80
Covariance contribution 0.23
Combinations/Pair 1.10
Mean z-score -2.73
Structure conservation index 0.83
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.20
SVM RNA-class probability 0.985371
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 18207586 72 + 22422827
AGCCAGACGGCUG----UACGGUACUUGGGGUUUUCUUAACAGCCGCGCUGUGGAAAACCUCGAACCGAUAUAUAU
((((....)))).----..((((..((((((((((((..(((((...)))))))))))))))))))))........ ( -29.90, z-score =  -4.27, R)
>droSim1.chrX 14029309 76 + 17042790
AGCCAGACGACGGACGGUACGGUACUUGGGGUUUUCUUAACAGCCGCGCUGUGGAAAACCUCGAACCGAUAUACAC
.(((...........))).((((..((((((((((((..(((((...)))))))))))))))))))))........ ( -26.20, z-score =  -2.41, R)
>droYak2.chrX 16842064 72 + 21770863
AUCUAGACGGCGG----UGCGGUACUUGGGGUUUUCUAAACAGCCGCGCAGUGGAAAACCUCAAGCGGAUAUAUAC
((((..((.((..----.)).)).((((((((((((((....((...))..)))))))))))))).))))...... ( -22.00, z-score =  -1.50, R)
>consensus
AGCCAGACGGCGG____UACGGUACUUGGGGUUUUCUUAACAGCCGCGCUGUGGAAAACCUCGAACCGAUAUAUAC
...................((((..((((((((((((..(((((...)))))))))))))))))))))........ (-21.57 = -21.80 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:09 2011