Locus 15270

Sequence ID dm3.chrX
Location 18,206,665 – 18,206,782
Length 117
Max. P 0.618923
window21036

overview

Window 6

Location 18,206,665 – 18,206,782
Length 117
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 94.87
Shannon entropy 0.08377
G+C content 0.64957
Mean single sequence MFE -49.55
Consensus MFE -44.74
Energy contribution -45.80
Covariance contribution 1.06
Combinations/Pair 1.03
Mean z-score -1.49
Structure conservation index 0.90
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.26
SVM RNA-class probability 0.618923
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 18206665 117 - 22422827
CCUGUUGCGCUCUGCUCUUUCACUCGAAUCGGCGCUCUCCGCGCCUCACGUUUGGAGCUUCUUGGCCGCUCGCCGAUUGGCCAGAGCGCUUCGGAACCGCUCGUCUUCGGAGUGACG
.(((..((((((((....((((..((....(((((.....)))))...))..))))(((..(((((.....)))))..)))))))))))..)))...(((((.......)))))... ( -46.00, z-score =  -1.30, R)
>droSim1.chrX 14028424 117 - 17042790
CCUGUUGCGCUCUGCUCUUCCACUCGAAUCGGCGCUCUCCGCGCCGCUCGCUUGGAGCUUGUUGGCGGCUCGCCGAUUGGCCAGAGCGCUUCGGAACCGCUCGUCUUCGGAGUGACG
.(((..((((((((....((((..(((..((((((.....)))))).)))..))))(((.(((((((...))))))).)))))))))))..)))...(((((.......)))))... ( -55.30, z-score =  -2.66, R)
>droSec1.super_13159 813 117 - 1079
CCUGUUGCGCUCUGCUCUUCCACUCGAAUCGGCGCUCUCCGCGCCGCUCGCUUGGAGCUUCUUGGCGGCUCGCCGAUUGGCCAGAGCGCUUCGGAACCGCUCGUCUUCGGAGUGACG
.(((..((((((((....((((..(((..((((((.....)))))).)))..))))(((..((((((...))))))..)))))))))))..)))...(((((.......)))))... ( -54.00, z-score =  -2.46, R)
>droYak2.chrX 16841079 117 - 21770863
CCUGUUGCGCUCAGCUCUUCCACUCGAAUCGGCGCUCUCCGCGCCUCUCGCUUGGAGCGUCUUGGCAGCUCGCCGAUUGGCCAGUUCGCUUCGGAGCCGCUCGUCUUCGGAGUGACG
.((((((((((((((..(((.....)))..(((((.....)))))....)))..))))))...)))))((.(((....))).)).(((((((((((.(....).))))))))))).. ( -42.90, z-score =   0.47, R)
>consensus
CCUGUUGCGCUCUGCUCUUCCACUCGAAUCGGCGCUCUCCGCGCCGCUCGCUUGGAGCUUCUUGGCGGCUCGCCGAUUGGCCAGAGCGCUUCGGAACCGCUCGUCUUCGGAGUGACG
.(((..((((((((....((((..(((...(((((.....)))))..)))..))))(((..(((((.....)))))..)))))))))))..)))...(((((.......)))))... (-44.74 = -45.80 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:08 2011