| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,206,508 – 18,206,610 |
| Length | 102 |
| Max. P | 0.562397 |
| Location | 18,206,508 – 18,206,610 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 123 |
| Reading direction | forward |
| Mean pairwise identity | 60.50 |
| Shannon entropy | 0.65245 |
| G+C content | 0.68920 |
| Mean single sequence MFE | -52.04 |
| Consensus MFE | -19.76 |
| Energy contribution | -23.28 |
| Covariance contribution | 3.52 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.562397 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18206508 102 + 22422827 ---------GACCCACUGGCCGAUGGGUUGAGG---GGGAG--CCGGUGGGGCGUGGCGCGG------AGAUGCCAUUCUACGCACUUGUGUGCGUGGGCCGUUG-CACGUAGGCCCAUCGGU ---------.........(((((((((((..((---(....--)).(..((((((((((...------...)))))).((((((((....))))))))))).)..-).)...))))))))))) ( -49.10, z-score = -1.24, R) >droSim1.chrX 14028267 102 + 17042790 ---------GACCCACUGGCCUGUGGGUUGAGG---GGGAG--CCGGUGGGGCGUGGCGCGG------AGAUGCCACUCUACGCACUUGUGUGCGUGGGCGAUGG-CACGUAGGCCCGUCGGU ---------(((((((......)))))))....---....(--(((..(((.(((((((...------...)))))).((((((((....))))))))(((....-..))).).)))..)))) ( -50.20, z-score = -1.13, R) >droYak2.chrX 16840911 113 + 21770863 GACCCACUGGACCCACUGGCUGCUGAGUUGAGU---GGGUGGCCCGGGGGGGCGUGGCGCGU------AGCUGCCGCACUGCGCACUUGUGUGCGUGGGCGGCGG-CACGUAGCCCCAUCGGU .(((((((.(((.(((.....).)).))).)))---))))...(((..(((((.....((((------.((((((((.(..(((((....)))))..))))))))-))))).)))))..))). ( -68.40, z-score = -2.88, R) >droEre2.scaffold_4690 8532786 113 + 18748788 ---------GACCCACUGACUGGUGGGCUGCGGUGAGGGGGUGCCGGAGGGGCGUGGCGCGUGGUCGUAGCUGCCGCACUGCGUCCCUGUGUGCGUGGGCGGUGG-CACGUAGCCGCAUCGGU ---------..((((((....)))))).((((((....(.((((((.(((((((..(.(((..((....))..).)).)..))))))).).(((....)))..))-))).).))))))..... ( -55.10, z-score = 0.48, R) >droAna3.scaffold_13248 3824041 84 - 4840945 ------------------UUCGGGGAGUUGUCA-----GGACCCUCGGAAGGCGUGGCCUGG--------UAGGCUCCCCAAUUGCCAGUGCCUGUUGCCAUCGGGUGUGUGGGU-------- ------------------...((((((((..((-----((.(((((....)).).)))))).--------.).)))))))....(((.(..((((.......))))..)...)))-------- ( -37.40, z-score = -1.38, R) >consensus _________GACCCACUGGCCGGUGGGUUGAGG___GGGAG__CCGGGGGGGCGUGGCGCGG______AGAUGCCACACUACGCACUUGUGUGCGUGGGCGGUGG_CACGUAGGCCCAUCGGU .........((((((........))))))..............((((.(((.(((((((............)))))).((((((((....))))))))..............).))).)))). (-19.76 = -23.28 + 3.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:07 2011