| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,203,111 – 18,203,209 |
| Length | 98 |
| Max. P | 0.660722 |
| Location | 18,203,111 – 18,203,209 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 73.01 |
| Shannon entropy | 0.54288 |
| G+C content | 0.48805 |
| Mean single sequence MFE | -27.88 |
| Consensus MFE | -17.76 |
| Energy contribution | -16.84 |
| Covariance contribution | -0.92 |
| Combinations/Pair | 1.44 |
| Mean z-score | -0.69 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.660722 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18203111 98 - 22422827 AAGAAAGCUGGUCAAAUCCAGCGCGACUUUGGGCUCAGUUCGGUUUCACACUCGAACGCGAGCAGAAGUG---UCCGCGAAUCAGUCUCCAAAGCAUCGAA---------- ......(((((......))))).(((((((((((((.((((((........))))))..)))).((..((---....))..)).....))))))..)))..---------- ( -31.70, z-score = -1.52, R) >droSim1.chrX 14024563 98 - 17042790 AAGAAAGCUGGUCAAAUCCAGCGCGACUUUGGGCUCAGUUCGGUUUCACACUCGAACGCGAGCAGAAGUG---UCCGCGAAUCAGUCUCCAAAGCAUCGAA---------- ......(((((......))))).(((((((((((((.((((((........))))))..)))).((..((---....))..)).....))))))..)))..---------- ( -31.70, z-score = -1.52, R) >droSec1.super_8 515201 98 - 3762037 AAGAAAGCUGGUCAAAUCCAGCGCGACUUUGGGCUCAGUUCGGUUUCACACUCGAACGCGAGCAGAAGUG---UCCGCGAAUCAGUCUCCAAAGCAUCGAA---------- ......(((((......))))).(((((((((((((.((((((........))))))..)))).((..((---....))..)).....))))))..)))..---------- ( -31.70, z-score = -1.52, R) >droYak2.chrX 16837102 108 - 21770863 AAGAAAGCUGGUCAAAUCCAGCGCGACUUUGGGCUCAGUUCGGUUUCACACUCGAACGCGAGCAGUAGUG---UCCGCGAAUCAGUCUCCAAAAAAAAAACAAACAAGAGA ..((..(((((......)))))(((((.(((.((((.((((((........))))))..))))..))).)---).)))...))..((((..................)))) ( -28.57, z-score = -1.17, R) >droEre2.scaffold_4690 8529189 98 - 18748788 AAGAAAGCUGGUCAAAUCCAGCGCGACUUUGGGCUCAGUUCGGUUUCACACUCGAACGCGAGCAGAAGUG---UCCGCGAAUCAGUCUCCCAAGCAACAGA---------- ..((..(((((......)))))((((((((..((((.((((((........))))))..)))).))))).---..)))...))..................---------- ( -30.00, z-score = -1.03, R) >droAna3.scaffold_13248 3820358 98 + 4840945 AAGAAAGCUGGUCAAAUCCAGCACAACUUUUGGUUCAGUUCGGUUUCACACUCGGAUGCGAGCAGUAGUACUCCCCGCGUACUAGUUUUCCCAACAAA------------- ......(((((......))))).......((((....(((((..(((......)))..)))))..((((((.......))))))......))))....------------- ( -23.80, z-score = -1.38, R) >dp4.chrXL_group3a 167611 98 - 2690836 AAGAAAGCUGGUCGAAUUCAGCUCAACUUUGGGUUCAGUUCGGUUUCAUACUCGGACGUGAUCAGAAGUG---UCCGCGAAGUGAUCAGAUGCUCAUCAGC---------- ......((((((((((((.((((((....)))))).))))))...((((.(.((((((..........))---)))).)..))))..........))))))---------- ( -25.50, z-score = 0.05, R) >droPer1.super_39 178303 98 + 745454 AAGAAAGCUGGUCGAAUUCAGCUCAACUUUGGGUUCAGUUCGGUUUCAUACUCGGACGUGAUCAGAAGUG---UCCGCGAAGUGAUCAGAUGCUCAUCAGC---------- ......((((((((((((.((((((....)))))).))))))...((((.(.((((((..........))---)))).)..))))..........))))))---------- ( -25.50, z-score = 0.05, R) >droWil1.scaffold_180702 1421947 94 - 4511350 AAGAAAGCUGGUCAAAUUCAGCGCAACUUUUGGAUCAGUUCGGUUCCAUACCUGGACGUGAACACUACUG---ACCGCGAAGUGAGCUCUUUCCAAA-------------- ..(((((((((......)))))((.((((((((.(((((...(((((..........).))))...))))---)))).)))))..))..))))....-------------- ( -25.00, z-score = -0.95, R) >droVir3.scaffold_12970 2947290 107 - 11907090 AAGAAAGCUGGUCGAAUUUAGCGCAACUUUUGGUUCAGUUCGGUUUUGUGCCUGGACGUGAACAGUAGUG---CACGCGAGAAGUGUUCUUCAGUCUUCCCACAAAGGAA- ..(((..((((..((.....((((.(((....((((((((((((.....))).)))).)))))))).)))---)((((.....)))))).))))..)))((.....))..- ( -29.00, z-score = -0.06, R) >droMoj3.scaffold_6473 3754929 100 - 16943266 AAGAAAGCUGGUCGAAUUUAGCGCAACUUUUGGUUCAGUUCGGUUUUGUGCCUGGACGUGAACAGUAGUG---UCCGCGAGAAGUGUUCUGCAGUCUCACCAA-------- ........((((........(((..(((....((((((((((((.....))).)))).)))))...))).---..)))((((..((.....)).)))))))).-------- ( -27.60, z-score = -0.21, R) >droGri2.scaffold_15081 3398916 107 + 4274704 AAGAAAGCUGGUCGAAUUCAGCGCAACUUUUGGCUCAGUUCGGUUUUGUGCCUGGACGUGAACAGUAGUG---CUCGGUAGAAGUGUUCUUCAAACUCAAACUCAAAGAA- ..((..(((((......)))))(((.((.(((..((((((((((.....))).)))).))).))).))))---)))....((((....))))..................- ( -24.50, z-score = 0.96, R) >consensus AAGAAAGCUGGUCAAAUCCAGCGCAACUUUGGGCUCAGUUCGGUUUCACACUCGGACGCGAGCAGAAGUG___UCCGCGAAUCAGUCUCCUAAGCAUCAAA__________ ......(((((......)))))...(((....((((.((((((........))))))..))))...))).......................................... (-17.76 = -16.84 + -0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:07 2011