| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,193,435 – 18,193,550 |
| Length | 115 |
| Max. P | 0.524896 |
| Location | 18,193,435 – 18,193,550 |
|---|---|
| Length | 115 |
| Sequences | 10 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.92 |
| Shannon entropy | 0.63899 |
| G+C content | 0.55738 |
| Mean single sequence MFE | -32.69 |
| Consensus MFE | -20.52 |
| Energy contribution | -20.48 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.32 |
| Mean z-score | -0.12 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.524896 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18193435 115 + 22422827 CCAAACCCCCGUCCAGAAUGGCCAUCCAUGGGCGCAGCAAGUGCAGCGC-----UGUUGUUGCCGCCAAAGUUGACGCUUUGUGUCAUUGUCAAGUGUUGCGCCUUGUUUGUGCAGCACC ..................((((........((((((((((..((...))-----..)))))).)))).....((((((...))))))..)))).(((((((((.......))))))))). ( -35.60, z-score = 0.06, R) >droSec1.super_8 505475 115 + 3762037 CCAAACCCCCGUCCAGAAUGGCCAUCCAUGGGCGCAGCAAGUGCAGCGC-----UGUUGUUGCCGCCAAAGUUGACGCUUUGUGUCAUUGUCAAGUGUUGCGCCUUGUUUGUGCAGCACC ..................((((........((((((((((..((...))-----..)))))).)))).....((((((...))))))..)))).(((((((((.......))))))))). ( -35.60, z-score = 0.06, R) >droYak2.chrX 16826946 99 + 21770863 ---------------------CCAUCCAUGGGCGCAGCAAGUGCAGCGCACCGCUGUUGUUGCCGCCAAAGUUGACGCUUUGUGUCACUGUCAAGUGUUGCGCCUUGUUUGUGCAGCACA ---------------------.........(((((((((...((((((...))))))))))).))))..(((.(((((...)))))))).....(((((((((.......))))))))). ( -39.80, z-score = -1.28, R) >droEre2.scaffold_4690 8519442 114 + 18748788 CCAAACCCCCA-CCAGAAUGGCCAUCCAUGGGCGCAGCAAGUGCAGUGC-----UGUUGUUGCCGCCAAAGUUGACGCUUUGUGUCAUUGUCAAGUGUUGCGCCUUGUUUGUACAGCACC .(((((.....-.....((((....))))((((((((((..((((((((-----.((....)).)).......(((((...))))))))).))..)))))))))).)))))......... ( -34.20, z-score = -0.01, R) >droAna3.scaffold_13248 3807739 107 - 4840945 -------UACCCCUGCCACCCUGCCACAUGGGCGCAGCAAGUGCAACCC------GGUGUUGCCGCCAAAGUUGACGCUUUGUGUCAUUGUCAAGUGUUGCGCCUUGUUUGUGCAGCACC -------.............((((.(((.((((((((((..(((((...------((((....)))).....((((((...))))))))).))..))))))))))....))))))).... ( -39.40, z-score = -1.58, R) >dp4.chrXL_group3a 157052 93 + 2690836 ---------------------CCGUCCAUGGAUGAAGCAAGUGCAGUGU------AUUGUUGCCGCCAAAGUUGACGCUAUGUGUCAUUGUUAAGUGUUGCGCCUUGUUUGUGCAGCCUC ---------------------.((((....)))).((((((.((.(((.------.....))).))).....((((((...))))))))))).((.(((((((.......))))))))). ( -22.90, z-score = -0.02, R) >droPer1.super_39 167901 90 - 745454 ------------------------UCCAUGGAUGAAGCAAGUGCAGUGU------AUUGUUGCCGCCAAAGUUGACGCUAUGUGUCAUUGUGAAGUGUUUCGCCUUGUUUGUGCAGCCUC ------------------------..((.((.(((((((..((((((((------(....)))..........(((((...)))))))))))...))))))))).))............. ( -18.80, z-score = 0.95, R) >droVir3.scaffold_12970 8973260 96 - 11907090 --CUAGGCCCCUGGCAGCGCUGCAUCCAUGGGCGCAGCAAGUGC-------------AGUCGCCGCCAAAGUUGACGCGUUGUGUCAUUGUCAAGUGUUGUGCCGUGUGUG--------- --...(((...((((.(((((((((...((....))....))))-------------)).))).))))....((((((...))))))..............))).......--------- ( -30.20, z-score = 1.45, R) >droMoj3.scaffold_6473 13201196 95 - 16943266 --CCCGGCCUAGGCCCGCUAUGGAUCCAUGGGCGCAGCAAGUGCUGUCG-------GAGUCGCCGCCAAAGUUGACGCUUUGUGUCAUUGUCAAGUGUUGCGCC---------------- --...(((....)))..(((((....)))))((((((((..(((((.((-------(.....))).))....((((((...))))))..).))..)))))))).---------------- ( -34.20, z-score = -0.38, R) >droGri2.scaffold_15081 886718 104 + 4274704 --------CUGAUGUUGC-AUGCAUCCAUGGGCGCAGCAAGUGCAGCCG-------GAGUCGCCGCCAAAGUUGACGCAUUGUGUCAUUGUCAAGUGCUGCGCCGUGUGUCUCUCUCUCU --------..(((((...-..)))))(((((((((((((..(((((.((-------(.....))).).....((((((...)))))).)).))..))))))))).))))........... ( -36.20, z-score = -0.39, R) >consensus _______CCC__CC___A___CCAUCCAUGGGCGCAGCAAGUGCAGCGC______GUUGUUGCCGCCAAAGUUGACGCUUUGUGUCAUUGUCAAGUGUUGCGCCUUGUUUGUGCAGCACC ..............................(((((((((..(((((............((....))......((((((...))))))))).))..)))))))))................ (-20.52 = -20.48 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:04 2011