| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,189,491 – 18,189,599 |
| Length | 108 |
| Max. P | 0.919495 |
| Location | 18,189,491 – 18,189,599 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 86.18 |
| Shannon entropy | 0.21404 |
| G+C content | 0.44707 |
| Mean single sequence MFE | -26.23 |
| Consensus MFE | -20.06 |
| Energy contribution | -21.38 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.919495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18189491 108 - 22422827 -----------CAGCCGCUGCCACCCACAAAACUAACCCACGCAAAGCCAUUAAAAAUGGCCUGGAAACGAAAUGAUUUUUAUCAUUAUCUGUGGGUGUGCAAAUAUCACGGCGAAAUU -----------..((((.(((((((((((.................(((((.....)))))..(....)((((((((....)))))).)))))))))).))).......))))...... ( -33.60, z-score = -3.75, R) >droSec1.super_8 501649 107 - 3762037 -----------CACCCUCCGCCACCCACAAAACUUACCCACGCAAAGCCAUUAAAAAUGGCCUGGAAACGAAAUGA-UUUUAUCAUUAUCUGUGGGCGUGCAAAUAUCACGGCGAAAUC -----------.......((((.((((((.................(((((.....)))))..(....)(((((((-(...)))))).)))))))).(((.......)))))))..... ( -27.60, z-score = -2.72, R) >droYak2.chrX 16823020 107 - 21770863 ------------ACUCCCCGCCACCCAUAAAACUUACCCACGCAAAGCCAUUAAAAAUGCCCUGGAAACGAAAUGAUUUUUAUCAUUAUCUGUGGGUGUGCAAAUAUCACGGCAAAAUC ------------.......((((((((((........(((.(((.............)))..)))....((((((((....)))))).)))))))))(((.......))))))...... ( -22.62, z-score = -1.84, R) >droEre2.scaffold_4690 8515668 118 - 18748788 CUCCCGUCACCCGCCAACCGCCACCCACAAAACUAGCCCACGCAAAGCCAUUAAAAAUGCCCUGGAAACGAAACGA-UUUUAUCAUUAACUGUGGGUGUGCAAAUAUCACAGCAAAAUC ...................((((((((((......((....))........(((((.((...((....))...)).-)))))........)))))))).)).................. ( -21.10, z-score = -0.96, R) >consensus ___________CACCCACCGCCACCCACAAAACUAACCCACGCAAAGCCAUUAAAAAUGCCCUGGAAACGAAAUGA_UUUUAUCAUUAUCUGUGGGUGUGCAAAUAUCACGGCAAAAUC ...................((((((((((.................(((((.....))))).((....)).((((((....))))))...)))))))).)).................. (-20.06 = -21.38 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:03 2011