| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,186,158 – 18,186,258 |
| Length | 100 |
| Max. P | 0.701609 |
| Location | 18,186,158 – 18,186,258 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 70.40 |
| Shannon entropy | 0.55011 |
| G+C content | 0.49014 |
| Mean single sequence MFE | -28.25 |
| Consensus MFE | -15.30 |
| Energy contribution | -16.67 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.701609 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18186158 100 - 22422827 GAUAAGAGGCGUCCACACGCUUUCAGUUGUGACGU-----AUUCCACGUGGCGAC----GAGUGAGUAAUCGCAA-GUAGUUCGCAAUCGAAUGCGAAACGUCACCGAGC (((..(((((((....)))))))..)))((.((((-----.....)))).))(((----(.((((....))))..-....((((((......)))))).))))....... ( -31.00, z-score = -1.00, R) >droSim1.chrX_random 4710523 100 - 5698898 GAUAAGAGGCGUCCACACGCUUUCAGUUGUGACGU-----AUUCCACGUGGCGAC----GAGUGAGUAAUCGCAA-GUAGUUCGCAAUCAAAUGCGAAACGUCACCGAGC (((..(((((((....)))))))..)))((.((((-----.....)))).))(((----(.((((....))))..-....((((((......)))))).))))....... ( -31.00, z-score = -1.45, R) >droSec1.super_8 498327 100 - 3762037 GAUAAGAGGCGUCCACACGCUUUCAGUUGUGACGU-----AUUCCACGUGGCGAC----GAGUGAGUAAUCGCAA-GUAGUUCGCAAUCAAAUGCGAAACGUCACCGAGC (((..(((((((....)))))))..)))((.((((-----.....)))).))(((----(.((((....))))..-....((((((......)))))).))))....... ( -31.00, z-score = -1.45, R) >droYak2.chrX 16818792 105 - 21770863 GAUAAGAGGCGUCCACACGCUUUCAGUUGUGACGU-----AUUCCACGUGGCGGCCACAAAGUGAGUAAUCGCAAUGGCAAUGGCAAUCGAAUGCGAAACGUCACUGAAC (((..(((((((....)))))))..)))(((((((-----.(((((..(((..((((((..((((....))))..))....))))..)))..)).))))))))))..... ( -32.70, z-score = -1.30, R) >droEre2.scaffold_4690 8512701 99 - 18748788 GAUAAGAGGCGUCCACACGCUCCCAGUUGUGACGUACUCCACUCCACGUGGCGAC----GUGUGAGUAAUCGCAA-G------GCAAUCGAAUGCAAAACGUCACUGAGC .....((((((((.(((.((.....)))))))))).)))..(((...((((((.(----.(((((....))))).-)------(((......)))....)))))).))). ( -29.30, z-score = -0.58, R) >droVir3.scaffold_12970 2926908 77 - 11907090 AACCGGAGGCA--GACAAGUUUUGUAAUGUUUUGU------CUUCAUUUCUGG------UUAUUCGCCAUUAAAAUCUUUAGAGCUAUGAA------------------- (((((((((.(--((((((...........)))))------))...)))))))------))......(((.....((....))...)))..------------------- ( -14.50, z-score = -0.61, R) >consensus GAUAAGAGGCGUCCACACGCUUUCAGUUGUGACGU_____AUUCCACGUGGCGAC____GAGUGAGUAAUCGCAA_GUAGUUCGCAAUCAAAUGCGAAACGUCACCGAGC ........((((.((((.((.....))))))))))............((((((........((((....))))..........(((......)))....))))))..... (-15.30 = -16.67 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:02 2011