| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,170,387 – 18,170,502 |
| Length | 115 |
| Max. P | 0.592499 |
| Location | 18,170,387 – 18,170,502 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.29 |
| Shannon entropy | 0.36755 |
| G+C content | 0.47977 |
| Mean single sequence MFE | -32.06 |
| Consensus MFE | -21.94 |
| Energy contribution | -21.82 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.592499 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18170387 115 + 22422827 GAUCAAU-----CACUCCACUCCAGUGCGCCGAUUAUGUGUCAUCCCCCAAAGGGGAGCGCUGGAGAGCUGUGAGUAUUUCUCAUCGUGUUGAAAUCUAGCUGGCCUAAUCAUUCACUAA ..((((.-----(((....(((((((((...(((.....))).(((((....))))))))))))))....(((((.....))))).)))))))........................... ( -36.80, z-score = -2.39, R) >droSim1.chrX 14012172 119 + 17042790 GAUCAAUCACUCCACUCCACUCCAGUGCGCCGAUUAUGUGUCAUCCCA-AAAGGGCAGCGCUGGAGAGCCGUGAGUAUUUCUCAUCGUGUUGAAAUCUAGCGGGCCUAAUCAUUUACUAA (((................(((((((((...(((.....)))..(((.-...)))..))))))))).((((((((.....)))))(((...(....)..))))))...)))......... ( -32.90, z-score = -1.38, R) >droSec1.super_8 483030 119 + 3762037 GAUCAAUUACUCCACUCCACUCCAGUGCGGCGAUUAUGUGUCAUCCCA-AAAGGGGAGCGCUGGAGAGCCGUGAGUAUUUCUAAUCGUGUUGAAAUCUAGCGGGCCUAAUCAUUUACUAA (((................(((((((((((((......)))).((((.-....)))))))))))))..((((.((.(((((..........))))))).)))).....)))......... ( -35.90, z-score = -1.78, R) >droYak2.chrX 16801934 108 + 21770863 GAUCAAU-----CACUCCGCUCCA-----CCGAUUAUGUGUCAUCGGU--GUGGGGAGCGCUAGAGAGCCGUGAGUAUUUCUCAUCGUGUUGAAAUCUGGCUGGCCUAAUCACUAACUAA (..((..-----..((((.(..((-----(((((........))))))--)..))))).((((((.(((((((((.....)))).)).)))....))))))))..).............. ( -33.30, z-score = -1.44, R) >droEre2.scaffold_4690 8497658 95 + 18748788 -----------------------GAUCAAUCGAUUAUGUGUCAUUCCA--GCGGAGAGCGCCAGAGAGCCGUGAGUAUUUCCCAUCGUGUUGAAAUCUGGCUGGCCUAAUCAUUUACUAA -----------------------........(((((.(.((((.....--((.....))((((((.(((((((.(.....).)).)).)))....))))))))))))))))......... ( -21.40, z-score = 0.26, R) >consensus GAUCAAU_____CACUCCACUCCAGUGCGCCGAUUAUGUGUCAUCCCA_AAAGGGGAGCGCUGGAGAGCCGUGAGUAUUUCUCAUCGUGUUGAAAUCUAGCUGGCCUAAUCAUUUACUAA ...............................(((((.(.(((.((((.....))))...((((((.(((((((((.....)))).)).)))....)))))).)))))))))......... (-21.94 = -21.82 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:56:00 2011