| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,774,546 – 11,774,615 |
| Length | 69 |
| Max. P | 0.833498 |
| Location | 11,774,546 – 11,774,615 |
|---|---|
| Length | 69 |
| Sequences | 7 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 57.32 |
| Shannon entropy | 0.84637 |
| G+C content | 0.31558 |
| Mean single sequence MFE | -11.19 |
| Consensus MFE | -4.36 |
| Energy contribution | -3.87 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 2.38 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.833498 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11774546 69 - 23011544 ----CCAUACGACAUUUGUAAAAGA-CUUAAAUAUUAAGAACGUUCUGAUUGCUUUCAUGCACAGAGCUUAAAA ----...(((((...))))).....-((((.....))))...((((((..(((......)))))))))...... ( -11.20, z-score = -1.57, R) >droSim1.chr2L 11584616 64 - 22036055 ---------CGUCAUUUGUUUAAUA-UUUAAAUACUAAGAACGUUCUGAAUGCUUUCAUGCACAGAGCUUAAAA ---------.......((((((...-..))))))........((((((..(((......)))))))))...... ( -10.40, z-score = -0.99, R) >droSec1.super_3 7163920 64 - 7220098 ---------CCUAAUUUGUUUAAUA-UUUAAAUACUAAGAACGUUCAGAAUGCUUUCAUGCACAGAGCUUAAAA ---------.......((((((...-..))))))........((((....(((......)))..))))...... ( -5.80, z-score = 0.46, R) >droYak2.chr2L 8194841 70 - 22324452 ----CCAAUUGAUAUUUGUAACAUGCCUUAAAUAUUAAGAACGUUUUGAUUGCUUAAAAGCUCAGAGCUAAAAA ----....((((((((((..........))))))))))....(((((((..(((....))))))))))...... ( -12.60, z-score = -1.79, R) >droEre2.scaffold_4929 13001771 70 + 26641161 ----CCUUCACACAUCUGUAAAAAGAUUUAAGUAUUAAGAACGCUUUAAUUGCUUUGAAGCUCAGAGCUUAAAA ----..........(((......)))(((((((.....((..(((((((.....)))))))))...))))))). ( -10.30, z-score = -0.28, R) >droAna3.scaffold_12916 9482369 73 + 16180835 UGGAAGAAGUAGUUUUUGUUAUUCG-AAAGAGGAUUAAAUAACAGAAGCCAGUUUAAGGACUUAUUGCUUUGAA .....(((((((((((((((((((.-...)).......))))))))))).((((....))))...))))))... ( -15.61, z-score = -2.11, R) >droVir3.scaffold_12963 6369389 68 - 20206255 ----GAAGGUAACACCUGGAAAAGGCUGUAAA-AUUAUAAUUGGU-GGAUUAUCCUGAGGCUGCGGCUUUAAAA ----..(((.....)))....(((((((((..-((((....))))-((.....))......))))))))).... ( -12.40, z-score = 0.07, R) >consensus ____CCA__CGACAUUUGUAAAAUG_UUUAAAUAUUAAGAACGUUCUGAUUGCUUUCAUGCUCAGAGCUUAAAA ..........................................((((((...((......)).))))))...... ( -4.36 = -3.87 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:38 2011