| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,148,660 – 18,148,721 |
| Length | 61 |
| Max. P | 0.957767 |
| Location | 18,148,660 – 18,148,721 |
|---|---|
| Length | 61 |
| Sequences | 6 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 79.82 |
| Shannon entropy | 0.37664 |
| G+C content | 0.51646 |
| Mean single sequence MFE | -18.63 |
| Consensus MFE | -12.49 |
| Energy contribution | -12.97 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.957767 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18148660 61 + 22422827 CGGACACAAAUGCGCCACCUGUUGCUGAUGCAACAAGGUCGUCCGGUGUUAUCAUCGCUGC-- ..(((((....(((..(((((((((....))))).)))))))...)))))...........-- ( -18.60, z-score = -0.80, R) >droSim1.chrX_random 4696605 58 + 5698898 CGAACACAAAUACGCCACCUGUUGCUGAUGCAACAAGGUCGUCCGGUGUUAUCAUCGC----- ..(((((....(((..(((((((((....))))).)))))))...)))))........----- ( -17.90, z-score = -2.10, R) >droSec1.super_8 461598 58 + 3762037 CGAACACAAAUACGCCACCUGUUGCUGAUGCAACAAGGUCGUCCGGUGUUAUCAUCGC----- ..(((((....(((..(((((((((....))))).)))))))...)))))........----- ( -17.90, z-score = -2.10, R) >droYak2.chrX 16779060 63 + 21770863 CGGCCUUAAAUGUGCCACCUGUUGCUGAUGCAACAAGGUCGUCCGGUGUUAUCAUCGGUCGAU .((((......).))).((((((((....))))).)))(((.((((((....)))))).))). ( -27.00, z-score = -4.27, R) >droEre2.scaffold_4690 8477022 58 + 18748788 CGCGCUUCAAUGCGCCACCUGUUGCCAAUGCAACAAGGUCGUUCGGUGUUAUCACUGC----- .((((......)))).(((((((((....))))).))))....(((((....))))).----- ( -20.70, z-score = -2.47, R) >droAna3.scaffold_13248 3754241 51 - 4840945 CAAACAAAAAUGCA-------UUUCUGAUGCAACAAGGUCGUCGGGUGUUAUCAUCCC----- ..........((((-------((...))))))...........(((((....))))).----- ( -9.70, z-score = -0.94, R) >consensus CGAACACAAAUGCGCCACCUGUUGCUGAUGCAACAAGGUCGUCCGGUGUUAUCAUCGC_____ .............((.(((((((((....))))).)))).)).(((((....)))))...... (-12.49 = -12.97 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:56 2011