| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,140,147 – 18,140,218 |
| Length | 71 |
| Max. P | 0.685096 |
| Location | 18,140,147 – 18,140,218 |
|---|---|
| Length | 71 |
| Sequences | 4 |
| Columns | 83 |
| Reading direction | reverse |
| Mean pairwise identity | 77.06 |
| Shannon entropy | 0.35212 |
| G+C content | 0.54505 |
| Mean single sequence MFE | -21.18 |
| Consensus MFE | -17.25 |
| Energy contribution | -16.50 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.685096 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18140147 71 - 22422827 ------------UUCGAAAGAGGACACACACAGACACGUGGGGAUGAUCGACCCAGAGAUCUCUCUCCAUUGACGUGUCCCAA ------------.((....))((((((...((.....(((((((.((((........))))..)))))))))..))))))... ( -23.30, z-score = -1.64, R) >droSim1.chrX_random 4687856 71 - 5698898 ------------AUCGAAAGAGGACACACAGAGACACGUGGGGAUGAUCGACCCAGAGAUCUCUCUCCAUUGACGUGCCCCAA ------------.((....)).................((((((((.((((...((((....))))...))))))).))))). ( -19.70, z-score = -0.58, R) >droYak2.chrX 16770037 83 - 21770863 AUUGGAGGGAGGAAUACAUACACACACACACAGACACGUGGGGACGAUCGACCCAGAGAUCUCUCUCCAUUGACGUGCCCCAA ..((((((((((................(((......)))(((.(....).))).....)))))))))).............. ( -21.90, z-score = -0.73, R) >droEre2.scaffold_4690 8469820 64 - 18748788 -------------------ACACACGCACACACACACGUGGGGAUGAUCGACCCAGAGAUCUCUCUCCAUUGGCGUGCCCCGA -------------------...(((((.((.......(((((((.((((........))))..))))))))))))))...... ( -19.81, z-score = -1.42, R) >consensus ____________AUCGAAAAAACACACACACAGACACGUGGGGAUGAUCGACCCAGAGAUCUCUCUCCAUUGACGUGCCCCAA ......................................((((((((.((((...((((....))))...))))))).))))). (-17.25 = -16.50 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:55 2011