| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,139,913 – 18,140,012 |
| Length | 99 |
| Max. P | 0.761594 |
| Location | 18,139,913 – 18,140,012 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 73.45 |
| Shannon entropy | 0.35562 |
| G+C content | 0.58159 |
| Mean single sequence MFE | -28.87 |
| Consensus MFE | -20.81 |
| Energy contribution | -20.93 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.761594 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18139913 99 + 22422827 UUGAGGUUUUUGUUUGCGUCACAAUGCCGUACAACUCCCCCUGUGCCAACCAAAAAAAAAAAACAAACACAACCCCGCCCGCCCGAUCGGGCGGGGAGG- .....((.(((((((((((....)))).(((((........)))))..............))))))).))..(((((((((......)))))))))...- ( -32.80, z-score = -2.30, R) >droSim1.chrX_random 4687633 88 + 5698898 UUGAGGUUUUUGUUUGCGUCACAAUGCCGCACAACUCCCCCUCCGCCAAGCGAAAAAA---------CACAACCCCGCCCGCCCGAUCGGGUGGGGG--- ..((((.....(((((((.(.....).)))).)))....))))(((...)))......---------.....(((((((((......))))))))).--- ( -31.50, z-score = -1.75, R) >droYak2.chrX 16769798 84 + 21770863 UUGAGGUUUUUGUUUGCGUCACAAUGCCGCACAACUCCCUCUACCGCCCCCAA----------------CAACCCCGCCCGCCCCCAUCUGUGUGGGGGA ..((((.....(((((((.(.....).)))).)))..))))............----------------............(((((((....))))))). ( -22.30, z-score = -0.40, R) >consensus UUGAGGUUUUUGUUUGCGUCACAAUGCCGCACAACUCCCCCUACGCCAACCAAAAAAA_________CACAACCCCGCCCGCCCGAUCGGGUGGGGGGG_ ...(((.....(((((((.(.....).)))).)))....)))..............................(((((((((......))))))))).... (-20.81 = -20.93 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:54 2011