| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,136,331 – 18,136,427 |
| Length | 96 |
| Max. P | 0.967651 |
| Location | 18,136,331 – 18,136,427 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 86.90 |
| Shannon entropy | 0.17275 |
| G+C content | 0.42640 |
| Mean single sequence MFE | -28.33 |
| Consensus MFE | -26.65 |
| Energy contribution | -25.55 |
| Covariance contribution | -1.10 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.79 |
| SVM RNA-class probability | 0.967651 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18136331 96 - 22422827 UCGCAACGCAGCUUCAUAGAUACUAAGAUACAUAGAUACUUUUGUGCGUUGUGUGUCCUGUUAGCAUCUUUAGCAGGACAGC-----UACUUAGGCAGUUA .((((((((.(..((.(((...))).))..)(((((....)))))))))))))(((((((((((.....)))))))))))((-----(.....)))..... ( -29.70, z-score = -2.09, R) >droSec1.super_8 448669 93 - 3762037 UCGCAAUGCAACUUCAUAGAUACUG--------AGAUACUUUUGUGCGUUGCGUGUCCUGUUGGCAUCUUUAACAGGACAGCUACUUUACUUAGGCAGUUA .(((((((((...((.(((...)))--------.))........))))))))).((((((((((.....))))))))))((((.(((.....))).)))). ( -27.30, z-score = -2.01, R) >droSim1.chrX 14001438 88 - 17042790 UCGCAAUGCAACUUCAUAGAUACUG--------AGAUACUUUUGUGCGUUGCGUGUCCUGUUGGCAUCUUUAGCAGGACAGC-----UACUUAGGCAGUUA .(((((((((...((.(((...)))--------.))........)))))))))(((((((((((.....)))))))))))((-----(.....)))..... ( -28.00, z-score = -1.79, R) >consensus UCGCAAUGCAACUUCAUAGAUACUG________AGAUACUUUUGUGCGUUGCGUGUCCUGUUGGCAUCUUUAGCAGGACAGC_____UACUUAGGCAGUUA ..((.(((((((..((((((....................)))))).)))))))((((((((((.....))))))))))...............))..... (-26.65 = -25.55 + -1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:54 2011