| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,126,413 – 18,126,526 |
| Length | 113 |
| Max. P | 0.810839 |
| Location | 18,126,413 – 18,126,526 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.82 |
| Shannon entropy | 0.09024 |
| G+C content | 0.50885 |
| Mean single sequence MFE | -35.74 |
| Consensus MFE | -34.16 |
| Energy contribution | -34.00 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.810839 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18126413 113 + 22422827 UUUAACCAGUACCCGGCAUUAGCUAAUGCACUGCGAUGAUAGAACCCAUUAGCCGGGGAUUGGCCUAAGGUCCUGGGAAGAUACACCAGAAGUGCAUAUGCUCAGCCUCAGAG------- .....(((((.((((((....((....)).....((((........)))).)))))).))))).((.((((.((((.........))))..(.((....)).).)))).))..------- ( -34.50, z-score = -1.36, R) >droEre2.scaffold_4690 8454987 113 + 18748788 UUUAACCAGUGCCCGGCAUUAGCUAAUGCACUGCGAUGAUGGAACCCAUUAGCCGGGGAUUGGCCUAAGGUCCUGGGAAGAUACACCAGAAGUGCAUAUGCGCCGCCUCAGAG------- .....(((((.((((((....((....)).......((((((...)))))))))))).))))).((.((((.((((.........))))..((((....)))).)))).))..------- ( -42.10, z-score = -2.47, R) >droYak2.chrX 16755291 120 + 21770863 UUUAACCAGUACCCGGCAUUAGCUAAUGCACUGCGAUGAUAGAACCCAUUAGCCGGGGAUUGGCCUAAGGUCUUGGGAAGAUACACCAGAAGUGCAUAUGCUCAGCCUCAGUCUCAGCCU .....(((((.((((((....((....)).....((((........)))).)))))).))))).((.((((..((((...((.(((.....))).))...)))))))).))......... ( -33.10, z-score = 0.13, R) >droSec1.super_8 438889 113 + 3762037 UUUAACCAGUACCCGGCAUUAGCUAAUGCACUGCGAUGAUAGAACCCAUUAGCCGGGAAUUGGCCUAAGGUCCUGGGAAGAUACACCAGAAGUGCAUAUGCUCAGCCUCAGAG------- .....(((((.((((((....((....)).....((((........)))).)))))).))))).((.((((.((((.........))))..(.((....)).).)))).))..------- ( -34.50, z-score = -1.80, R) >droSim1.chrX_random 223016 113 + 5698898 UUUAACCAGUACCCGGCAUUAGCUAAUGCACUGCGAUGAUAGAACCCAUUAGCCGGGGAUUGGCCUAAGGUCCUGGGAAGAUACACCAGAAGUGCAUAUGCUCAGCCUCAGAG------- .....(((((.((((((....((....)).....((((........)))).)))))).))))).((.((((.((((.........))))..(.((....)).).)))).))..------- ( -34.50, z-score = -1.36, R) >consensus UUUAACCAGUACCCGGCAUUAGCUAAUGCACUGCGAUGAUAGAACCCAUUAGCCGGGGAUUGGCCUAAGGUCCUGGGAAGAUACACCAGAAGUGCAUAUGCUCAGCCUCAGAG_______ .....(((((.((((((....((....)).....((((........)))).)))))).))))).((.((((.((((.........))))..(.((....)).).)))).))......... (-34.16 = -34.00 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:45 2011