| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,772,994 – 11,773,088 |
| Length | 94 |
| Max. P | 0.997353 |
| Location | 11,772,994 – 11,773,088 |
|---|---|
| Length | 94 |
| Sequences | 8 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 91.65 |
| Shannon entropy | 0.15757 |
| G+C content | 0.45876 |
| Mean single sequence MFE | -34.06 |
| Consensus MFE | -30.24 |
| Energy contribution | -31.21 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.07 |
| Mean z-score | -3.44 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.09 |
| SVM RNA-class probability | 0.997353 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11772994 94 + 23011544 CACCUGCAUUGCUGCAUA----UGUGGCCAAA-UGGGUAUUAUCUAUAAAAUGCCCGCAGGUACUUUUCCACUGUUUUGGCCAUAUUUCAAUGCGGCCC ..........((((((((----((((((((((-.(((((((........)))))))((((...........)))))))))))))))....))))))).. ( -36.00, z-score = -3.79, R) >droSim1.chr2L 11583078 94 + 22036055 CACCUGCAUUGCUGCAUA----UGUGGCCAAA-UGGGUAUUAUCUAUAAAAUGCCCGCAGGUACUUUUCCACUGUUUUGGCCAUAUUUCAAUGCGGACC ...((((((((......(----((((((((((-.(((((((........)))))))((((...........)))))))))))))))..))))))))... ( -36.50, z-score = -4.33, R) >droSec1.super_3 7162369 94 + 7220098 CACCUGCAUUGCUGCAUA----UGUGGCCAAA-UGGGUAUUAUCUAUAAAAUGCCCGCAGGUACUUUUCCACUGUUUUGCCCAUAUUUCAAUGCGGACC ...((((((((....(((----((.(((.(((-((((((((........)))))))...((.......))...)))).))))))))..))))))))... ( -30.00, z-score = -2.63, R) >droYak2.chr2L 8193368 94 + 22324452 CGCCUGCAUCGUUGCAUA----UGUGGCCAAA-UGGGUAUUAUCUAUAAAAUGCCCGCAGGUACUUUUCCACUGUUUUGGCCAUAUUUCAAUGCGGCCC .(((.((((...((...(----((((((((((-.(((((((........)))))))((((...........)))))))))))))))..))))))))).. ( -34.90, z-score = -3.54, R) >droEre2.scaffold_4929 13000321 94 - 26641161 CGCCUGCAUCGCUGCAUA----UGUGGCCAAA-UGGGUAUUAUCUAUAAAAUGCCCGCAGGUACUUUUCCACUGUUUUGGCCAUAUUUCAAUGCGGCCC ..........((((((((----((((((((((-.(((((((........)))))))((((...........)))))))))))))))....))))))).. ( -36.30, z-score = -3.77, R) >droAna3.scaffold_12916 9481025 98 - 16180835 CGCCUGCAUCGCUGCAUACAUAUGUGGCCAAA-UGGGUAUUAUCUAUAAAAUGCCCGCAGGUACUUUUCCACUGUUUUGGCCAUAUUUCAAUGCAGCCC ..........(((((((....(((((((((((-.(((((((........)))))))((((...........)))))))))))))))....))))))).. ( -38.60, z-score = -4.76, R) >dp4.chr4_group3 2645200 92 + 11692001 ---GUGCCCUGGCCCAUA----UGUGGCCAAAAUGGGUAUUAUCUAUAAAAUGCCCGCAGGUACUUUUCCACUGUUUUGGCCAUAUUUCAAUGCAGCUC ---.(((..(((.....(----(((((((((((((((((((........)))))))...((.......))...))))))))))))).)))..))).... ( -30.10, z-score = -2.36, R) >droPer1.super_1 4119762 92 + 10282868 ---GUGCCCUGGCCCAUA----UGUGGCCAAAAUGGGUAUUAUCUAUAAAAUGCCCGCAGGUACUUUUCCACUGUUUUGGCCAUAUUUCAAUGCAGCUC ---.(((..(((.....(----(((((((((((((((((((........)))))))...((.......))...))))))))))))).)))..))).... ( -30.10, z-score = -2.36, R) >consensus CACCUGCAUUGCUGCAUA____UGUGGCCAAA_UGGGUAUUAUCUAUAAAAUGCCCGCAGGUACUUUUCCACUGUUUUGGCCAUAUUUCAAUGCGGCCC ..........(((((((.....((((((((((..(((((((........)))))))((((...........)))))))))))))).....))))))).. (-30.24 = -31.21 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:38 2011