| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,126,032 – 18,126,145 |
| Length | 113 |
| Max. P | 0.932680 |
| Location | 18,126,032 – 18,126,145 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 79.64 |
| Shannon entropy | 0.36657 |
| G+C content | 0.42087 |
| Mean single sequence MFE | -30.10 |
| Consensus MFE | -20.80 |
| Energy contribution | -21.36 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.932680 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18126032 113 - 22422827 AGUUCGAUUUGAAUAGUGAAAUAAUUAGGGUGCGUUAUGAAAAACAUGAUUUACUUUAAUUAGGGUCCUUUGAGCCGCUUUACGCGCUGCGAAUCUCUUCACACCCGUUAAAC .((((.....)))).(((((.(((((((((((.((((((.....)))))).)))))))))))(((...(((((((.((.....))))).)))).))))))))........... ( -27.00, z-score = -1.39, R) >droEre2.scaffold_4690 8454609 101 - 18748788 GGUUCGAUUUGAAUGGCGAAACAAGUGGGCUGCGUUAUGAGCAGCACGAUUUAGUUUAAUUAGGCUCCUUGGAGCCGCGUUACG-----UGG-------CGCUACAACCAAAC ((((.(............((((((((.((((((.......))))).).)))).)))).....(((((....)))))(((((...-----.))-------)))..))))).... ( -32.20, z-score = -1.41, R) >droYak2.chrX 16754864 108 - 21770863 AGUUCGAUUUGAAUAGUGGAAUAAUUAGAGUGCGUUAUGAAAAACAUGAUUUAGUUUAAUUAGGAUCCUUUGAGUCGAGUUACAGCUUCUGGGU-----AGCCCCCAUCAAAC ..(((((((..((....(((.((((((((.((.((((((.....)))))).)).))))))))...)))))..)))))))..........((((.-----....))))...... ( -26.30, z-score = -2.00, R) >droSec1.super_8 438509 113 - 3762037 AGUUCGAUUUGAAUAGUGAAGUAAUUAGGGUGCGUUAUGAAAAACAUGAUUUACUUUAAUUAGGCUCCUUUGAGCCGCGUUACGCGCUGCGAAUCUCCCCGCACCUAUUAAAC ...........(((((.(...(((((((((((.((((((.....)))))).)))))))))))(((((....)))))(((.....)))((((........)))))))))).... ( -30.90, z-score = -2.33, R) >droSim1.chrX_random 222635 113 - 5698898 AGUUCGAUUUGAAUAGUGAAGUAAUUAGGGUGCGUUAUGAAAAACAUGAUUUGCUUUAAUUAGGCUCCUUUGAGCCGCGAUACGCGCUGCGAGUCUCCUCGCACCCAUUAAAC .((((.....)))).............(((((((..(((.....)))(((((((........(((((....)))))(((.....))).)))))))....)))))))....... ( -34.10, z-score = -2.59, R) >consensus AGUUCGAUUUGAAUAGUGAAAUAAUUAGGGUGCGUUAUGAAAAACAUGAUUUACUUUAAUUAGGCUCCUUUGAGCCGCGUUACGCGCUGCGAAUCUC__CGCACCCAUUAAAC .....((((((....(((...(((((((((((.((((((.....)))))).)))))))))))(((((....)))))......)))....)))))).................. (-20.80 = -21.36 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:44 2011